KMC012693A_c01
[Fasta Sequence]
[Nr Search]
[EST assemble image]
Fasta Sequence
>KMC012693A_C01 KMC012693A_c01
ctctaaactgAAGGGTAGATTTAGAATGTAAAGTAAGTAATTACAGTTACTAATTTGAAA
ATTAACAACTGAGATATCATCATATGCATACACATGTATGAAATAACAAGGATACCATAT
AAGTACCATTATTTTCTATCATGTTGCTTTCTTCCATTTCTGTATTAATATTTGTATCAA
AAAAAATTTAAAAACTTCTTACTCCGTCCATGTTACATGCTTTTTTTATGCTAAGGATTT
GGGTATGCAGATTTGGATGATCTTGTAGTCAAAGAAGGCTTCATCTGAACTATATGTTCT
TCACTTACTCCCATTTTCCTTGCATAACGACCTGCTTCAAAGAACCTTTGGGCTGCATCA
TCCATGTAATCTTTCCCTTGCTTAACAGTCATGTCTTTCCCTATTGTGTCAGGGTAACTA
GTGAAGATGTTATCTCCTTTAATCACCGCCGCGAGTTGGATCAACTCCTGCTGAAATTCA
CTGAGCTTTGCATCTTCAT
Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC012693A_C01 KMC012693A_c01
(499 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_180255.1| putative phospholipase C; protein id: At2g26870... 97 1e-19
gb|AAM74513.1| At1g07230/F10K1_4 [Arabidopsis thaliana] gi|24417... 95 4e-19
ref|NP_172203.1| unknown protein; protein id: At1g07230.1 [Arabi... 95 4e-19
dbj|BAB90779.1| B1139B11.7 [Oryza sativa (japonica cultivar-group)] 95 5e-19
ref|NP_190430.1| putative protein; protein id: At3g48610.1 [Arab... 87 1e-16
>ref|NP_180255.1| putative phospholipase C; protein id: At2g26870.1 [Arabidopsis
thaliana] gi|7485404|pir||T02648 probable phospholipase
C [imported] - Arabidopsis thaliana
gi|3426039|gb|AAC32238.1| putative phospholipase C
[Arabidopsis thaliana] gi|24417129|dbj|BAC22507.1|
phosphatidylglycerol specific phospholipase C
[Arabidopsis thaliana]
Length = 514
Score = 97.1 bits (240), Expect = 1e-19
Identities = 48/79 (60%), Positives = 60/79 (75%)
Frame = -3
Query: 497 EDAKLSEFQQELIQLAAVIKGDNIFTSYPDTIGKDMTVKQGKDYMDDAAQRFFEAGRYAR 318
E A L+EFQQEL+QLAAV+KGDN+ T++P I K MTV +GK YM+DA +RF EAGR A
Sbjct: 434 EKALLTEFQQELVQLAAVLKGDNMLTTFPKEISKGMTVIEGKRYMEDAMKRFLEAGRMAL 493
Query: 317 KMGVSEEHIVQMKPSLTTR 261
MG ++E +V MK SLT R
Sbjct: 494 SMGANKEELVHMKTSLTGR 512
>gb|AAM74513.1| At1g07230/F10K1_4 [Arabidopsis thaliana]
gi|24417127|dbj|BAC22506.1| phosphatidylglycerol
specific phospholipase C [Arabidopsis thaliana]
Length = 533
Score = 95.1 bits (235), Expect = 4e-19
Identities = 50/87 (57%), Positives = 62/87 (70%)
Frame = -3
Query: 497 EDAKLSEFQQELIQLAAVIKGDNIFTSYPDTIGKDMTVKQGKDYMDDAAQRFFEAGRYAR 318
ED+KLSEFQ ELIQLA+ + GD++ SYPD IGK+MTV +G Y +DA Q+F EAG A
Sbjct: 442 EDSKLSEFQVELIQLASQLVGDHLLNSYPD-IGKNMTVSEGNKYAEDAVQKFLEAGMAAL 500
Query: 317 KMGVSEEHIVQMKPSLTTRSSKSAYPN 237
+ G E IV M+PSLTTR+S S N
Sbjct: 501 EAGADENTIVTMRPSLTTRTSPSEGTN 527
>ref|NP_172203.1| unknown protein; protein id: At1g07230.1 [Arabidopsis thaliana]
gi|25406964|pir||E86207 hypothetical protein [imported]
- Arabidopsis thaliana
gi|8954023|gb|AAF82197.1|AC067971_5 Contains similarity
to an unknown protein T8P19.120 gi|6523092 from
Arabidopsis thaliana BAC T8P19 gb|AL133315. ESTs
gb|R84021, gb|AI992399, gb|H76814, gb|F15169,
gb|AA585873, and gb|AA605516 come from this gene
Length = 533
Score = 95.1 bits (235), Expect = 4e-19
Identities = 50/87 (57%), Positives = 62/87 (70%)
Frame = -3
Query: 497 EDAKLSEFQQELIQLAAVIKGDNIFTSYPDTIGKDMTVKQGKDYMDDAAQRFFEAGRYAR 318
ED+KLSEFQ ELIQLA+ + GD++ SYPD IGK+MTV +G Y +DA Q+F EAG A
Sbjct: 442 EDSKLSEFQVELIQLASQLVGDHLLNSYPD-IGKNMTVSEGNKYAEDAVQKFLEAGMAAL 500
Query: 317 KMGVSEEHIVQMKPSLTTRSSKSAYPN 237
+ G E IV M+PSLTTR+S S N
Sbjct: 501 EAGADENTIVTMRPSLTTRTSPSEGTN 527
>dbj|BAB90779.1| B1139B11.7 [Oryza sativa (japonica cultivar-group)]
Length = 520
Score = 94.7 bits (234), Expect = 5e-19
Identities = 47/81 (58%), Positives = 62/81 (76%)
Frame = -3
Query: 497 EDAKLSEFQQELIQLAAVIKGDNIFTSYPDTIGKDMTVKQGKDYMDDAAQRFFEAGRYAR 318
E+AKLSEFQQEL+QLA+V+ GD+ +S DTI M V++G YM A +RFFE G A+
Sbjct: 434 EEAKLSEFQQELVQLASVLNGDHQLSSLQDTIRDRMNVREGIAYMRGAVKRFFETGMSAK 493
Query: 317 KMGVSEEHIVQMKPSLTTRSS 255
+MGV +E IV+M+PSLTTR+S
Sbjct: 494 RMGVDDEQIVKMRPSLTTRTS 514
>ref|NP_190430.1| putative protein; protein id: At3g48610.1 [Arabidopsis thaliana]
gi|11358440|pir||T46205 hypothetical protein T8P19.120 -
Arabidopsis thaliana gi|6523092|emb|CAB62350.1| putative
protein [Arabidopsis thaliana]
Length = 462
Score = 86.7 bits (213), Expect = 1e-16
Identities = 42/79 (53%), Positives = 55/79 (69%)
Frame = -3
Query: 497 EDAKLSEFQQELIQLAAVIKGDNIFTSYPDTIGKDMTVKQGKDYMDDAAQRFFEAGRYAR 318
EDA LSEFQ E++QLAAV+ GD+ +S+P+ IGK MTVKQ +Y+ A RF A + A
Sbjct: 381 EDAALSEFQGEVVQLAAVLNGDHFLSSFPEEIGKKMTVKQAHEYVKGATSRFIRASKEAM 440
Query: 317 KMGVSEEHIVQMKPSLTTR 261
K+G + IV M+ SLTTR
Sbjct: 441 KLGADKSAIVDMRSSLTTR 459
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 393,592,848
Number of Sequences: 1393205
Number of extensions: 8159290
Number of successful extensions: 18670
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 17993
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18662
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 14783057727
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
EST assemble image
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|
|
|
clone |
accession |
position |
1 |
MFBL032f09_f |
BP042875 |
1 |
406 |
2 |
MPDL059c05_f |
AV779490 |
11 |
467 |
3 |
MPD090h12_f |
AV775950 |
55 |
502 |
|
Lotus japonicus
Kazusa DNA Research Institute