Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC012654A_C01 KMC012654A_c01
(562 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_565783.1| Expressed protein; protein id: At2g34310.1, sup... 56 3e-07
ref|NP_174246.1| hypothetical protein; protein id: At1g29530.1 [... 52 4e-06
gb|AAM65758.1| unknown [Arabidopsis thaliana] 44 0.002
gb|AAL36235.1| unknown protein [Arabidopsis thaliana] gi|2841665... 43 0.003
pir||T14807 hypothetical protein F15J5.40 - Arabidopsis thaliana... 43 0.003
>ref|NP_565783.1| Expressed protein; protein id: At2g34310.1, supported by cDNA:
16411. [Arabidopsis thaliana] gi|20197162|gb|AAC27407.2|
Expressed protein [Arabidopsis thaliana]
gi|21553761|gb|AAM62854.1| unknown [Arabidopsis
thaliana] gi|22531066|gb|AAM97037.1| expressed protein
[Arabidopsis thaliana] gi|23198032|gb|AAN15543.1|
expressed protein [Arabidopsis thaliana]
Length = 242
Score = 56.2 bits (134), Expect = 3e-07
Identities = 28/55 (50%), Positives = 39/55 (70%), Gaps = 1/55 (1%)
Frame = -1
Query: 421 RNPESTNGA-EHAKDSETPECSENQPLVASAPHMVQKTSWLSCCGLFEVLSGSSR 260
R+ E TN ++ K+ E PECS+ + L+ S P V +TSWLSCCGLF+V++GS R
Sbjct: 189 RSAEETNKEIKNVKEYEVPECSKEKSLLPSGPP-VFRTSWLSCCGLFDVMAGSER 242
>ref|NP_174246.1| hypothetical protein; protein id: At1g29530.1 [Arabidopsis
thaliana] gi|25518441|pir||C86418 hypothetical protein
F15D2.11 [imported] - Arabidopsis thaliana
gi|12323519|gb|AAG51731.1|AC068667_10 hypothetical
protein; 69078-67980 [Arabidopsis thaliana]
Length = 245
Score = 52.4 bits (124), Expect = 4e-06
Identities = 25/61 (40%), Positives = 35/61 (56%), Gaps = 9/61 (14%)
Frame = -1
Query: 415 PESTNGAEHAKDSETPECSEN---------QPLVASAPHMVQKTSWLSCCGLFEVLSGSS 263
PE++ E + SE P E QPL+ P +V++TSWLSCCGLF+ ++GS
Sbjct: 185 PETSKKVESVRKSEVPVSPEEKLAESSACMQPLLLPGPPVVRRTSWLSCCGLFDAMTGSD 244
Query: 262 R 260
R
Sbjct: 245 R 245
>gb|AAM65758.1| unknown [Arabidopsis thaliana]
Length = 228
Score = 43.5 bits (101), Expect = 0.002
Identities = 28/79 (35%), Positives = 39/79 (48%)
Frame = -1
Query: 496 ARASSLEEPRPKKFDLKVSASVSHGRNPESTNGAEHAKDSETPECSENQPLVASAPHMVQ 317
A S ++E K L+ S V G N ES H E P++ + +
Sbjct: 160 ATDSDVKENEGKTSPLQESNGVPEG-NIESNVVISH---------EEEAPILIPTHGIAK 209
Query: 316 KTSWLSCCGLFEVLSGSSR 260
+TSW SCCGLF+V++GSSR
Sbjct: 210 RTSWFSCCGLFDVVTGSSR 228
>gb|AAL36235.1| unknown protein [Arabidopsis thaliana] gi|28416651|gb|AAO42856.1|
At4g18070 [Arabidopsis thaliana]
Length = 262
Score = 42.7 bits (99), Expect = 0.003
Identities = 28/79 (35%), Positives = 38/79 (47%)
Frame = -1
Query: 496 ARASSLEEPRPKKFDLKVSASVSHGRNPESTNGAEHAKDSETPECSENQPLVASAPHMVQ 317
A S ++E K L S V G N ES H E P++ + +
Sbjct: 194 ATDSDVKENEGKTSPLPESNGVPEG-NIESNVVISH---------EEEAPILIPTHGIAK 243
Query: 316 KTSWLSCCGLFEVLSGSSR 260
+TSW SCCGLF+V++GSSR
Sbjct: 244 RTSWFSCCGLFDVVTGSSR 262
>pir||T14807 hypothetical protein F15J5.40 - Arabidopsis thaliana
gi|5816993|emb|CAB53648.1| putative protein [Arabidopsis
thaliana] gi|7268559|emb|CAB78809.1| putative protein
[Arabidopsis thaliana]
Length = 262
Score = 42.7 bits (99), Expect = 0.003
Identities = 28/79 (35%), Positives = 38/79 (47%)
Frame = -1
Query: 496 ARASSLEEPRPKKFDLKVSASVSHGRNPESTNGAEHAKDSETPECSENQPLVASAPHMVQ 317
A S ++E K L S V G N ES H E P++ + +
Sbjct: 194 ATDSDVKENEGKTSPLPESNGVPEG-NIESNVVISH---------EEEAPILIPTHGIAK 243
Query: 316 KTSWLSCCGLFEVLSGSSR 260
+TSW SCCGLF+V++GSSR
Sbjct: 244 RTSWFSCCGLFDVVTGSSR 262
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 463,381,529
Number of Sequences: 1393205
Number of extensions: 9417122
Number of successful extensions: 23478
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 22734
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23461
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20095422690
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
