Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC012640A_C01 KMC012640A_c01
(504 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T09586 probable cdc2-like protein kinase cdc2MsD - alfalfa ... 123 1e-27
gb|AAL47482.1| cyclin-dependent kinase [Helianthus tuberosus] 119 3e-26
gb|AAG01533.1|AF289466_1 cyclin-dependent kinase B1-2 [Nicotiana... 118 3e-26
gb|AAG01532.1|AF289465_1 cyclin-dependent kinase B1-1 [Nicotiana... 118 3e-26
emb|CAC15503.1| B1-type cyclin dependent kinase [Lycopersicon es... 117 1e-25
>pir||T09586 probable cdc2-like protein kinase cdc2MsD - alfalfa
gi|1806142|emb|CAA65980.1| cdc2MsD [Medicago sativa]
Length = 311
Score = 123 bits (308), Expect = 1e-27
Identities = 55/65 (84%), Positives = 63/65 (96%)
Frame = -2
Query: 503 GVTSLRDWHVYPRWEPQTLARAVPSLGPEGVDLLSKMLKYHPADRISAQAALDHPYFDTL 324
GV+SLRDWHVYPRWEPQ LARAVPSL P+GVDLL+KMLKY+PA+RISA+AALDHPYFD+L
Sbjct: 247 GVSSLRDWHVYPRWEPQNLARAVPSLSPDGVDLLTKMLKYNPAERISAKAALDHPYFDSL 306
Query: 323 DQSQY 309
D+SQY
Sbjct: 307 DKSQY 311
>gb|AAL47482.1| cyclin-dependent kinase [Helianthus tuberosus]
Length = 304
Score = 119 bits (297), Expect = 3e-26
Identities = 53/65 (81%), Positives = 61/65 (93%)
Frame = -2
Query: 503 GVTSLRDWHVYPRWEPQTLARAVPSLGPEGVDLLSKMLKYHPADRISAQAALDHPYFDTL 324
GV+SL+DWHVYPRWE Q LAR+VPSLGPEGVDLLSKMLKY PADRISA+ A+DHPYFD+L
Sbjct: 240 GVSSLKDWHVYPRWEAQNLARSVPSLGPEGVDLLSKMLKYDPADRISAKLAMDHPYFDSL 299
Query: 323 DQSQY 309
D+SQ+
Sbjct: 300 DRSQF 304
>gb|AAG01533.1|AF289466_1 cyclin-dependent kinase B1-2 [Nicotiana tabacum]
Length = 303
Score = 118 bits (296), Expect = 3e-26
Identities = 52/65 (80%), Positives = 62/65 (95%)
Frame = -2
Query: 503 GVTSLRDWHVYPRWEPQTLARAVPSLGPEGVDLLSKMLKYHPADRISAQAALDHPYFDTL 324
GV+SLRDWHVYP+WEPQ LA AVP+LGP+GVDLL+KML+Y PADRISA+AALDHPYFD+L
Sbjct: 239 GVSSLRDWHVYPKWEPQNLASAVPALGPDGVDLLTKMLQYDPADRISAKAALDHPYFDSL 298
Query: 323 DQSQY 309
D+SQ+
Sbjct: 299 DKSQF 303
>gb|AAG01532.1|AF289465_1 cyclin-dependent kinase B1-1 [Nicotiana tabacum]
Length = 303
Score = 118 bits (296), Expect = 3e-26
Identities = 52/65 (80%), Positives = 62/65 (95%)
Frame = -2
Query: 503 GVTSLRDWHVYPRWEPQTLARAVPSLGPEGVDLLSKMLKYHPADRISAQAALDHPYFDTL 324
GV+SLRDWHVYP+WEPQ LA AVP+LGP+GVDLL+KML+Y PADRISA+AALDHPYFD+L
Sbjct: 239 GVSSLRDWHVYPKWEPQNLASAVPALGPDGVDLLTKMLQYDPADRISAKAALDHPYFDSL 298
Query: 323 DQSQY 309
D+SQ+
Sbjct: 299 DKSQF 303
>emb|CAC15503.1| B1-type cyclin dependent kinase [Lycopersicon esculentum]
Length = 303
Score = 117 bits (292), Expect = 1e-25
Identities = 51/65 (78%), Positives = 62/65 (94%)
Frame = -2
Query: 503 GVTSLRDWHVYPRWEPQTLARAVPSLGPEGVDLLSKMLKYHPADRISAQAALDHPYFDTL 324
GV+SLRDWHVYP+WEPQ LA AVP+LGP+GVDLL+KMLK+ P+DRISA+AALDHPYFD+L
Sbjct: 239 GVSSLRDWHVYPQWEPQNLASAVPALGPDGVDLLTKMLKFDPSDRISAKAALDHPYFDSL 298
Query: 323 DQSQY 309
D+SQ+
Sbjct: 299 DKSQF 303
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 438,379,511
Number of Sequences: 1393205
Number of extensions: 8922370
Number of successful extensions: 21859
Number of sequences better than 10.0: 1356
Number of HSP's better than 10.0 without gapping: 21296
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21848
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 15362785481
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
