Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC012634A_C01 KMC012634A_c01
(457 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_564136.1| expressed protein; protein id: At1g21200.1, sup... 94 5e-19
ref|NP_177813.1| hypothetical protein; protein id: At1g76870.1 [... 85 4e-16
gb|AAK69274.1| unknown [Glycine max] 70 1e-11
ref|NP_187615.1| unknown protein; protein id: At3g10040.1 [Arabi... 65 3e-10
gb|AAM13849.2| unknown protein [Arabidopsis thaliana] 65 3e-10
>ref|NP_564136.1| expressed protein; protein id: At1g21200.1, supported by cDNA:
gi_15027986, supported by cDNA: gi_20259202 [Arabidopsis
thaliana] gi|25372951|pir||C86345 hypothetical protein
F16F4.11 - Arabidopsis thaliana
gi|8920640|gb|AAF81362.1|AC036104_11 Contains weak
similarity to DNA-binding protein (GT-1a) from Nicotiana
tabacum gb|M93436. [Arabidopsis thaliana]
gi|15027987|gb|AAK76524.1| unknown protein [Arabidopsis
thaliana] gi|20259203|gb|AAM14317.1| unknown protein
[Arabidopsis thaliana]
Length = 443
Score = 94.4 bits (233), Expect = 5e-19
Identities = 42/57 (73%), Positives = 54/57 (94%)
Frame = -1
Query: 454 QKLQIQAEMLELEKQRLKWQRFSKKKDRELEKMKLENERMKLENERIALELKRKEIG 284
QKLQIQ E+LELEKQR +WQRFSKK+D+ELE+M++ENERMKLEN+R+ LELK++E+G
Sbjct: 384 QKLQIQVELLELEKQRFRWQRFSKKRDQELERMRMENERMKLENDRMGLELKQRELG 440
>ref|NP_177813.1| hypothetical protein; protein id: At1g76870.1 [Arabidopsis
thaliana] gi|25372950|pir||E96797 hypothetical protein
F7O12.4 [imported] - Arabidopsis thaliana
gi|12322229|gb|AAG51150.1|AC079283_7 hypothetical
protein [Arabidopsis thaliana]
Length = 385
Score = 84.7 bits (208), Expect = 4e-16
Identities = 38/57 (66%), Positives = 53/57 (92%)
Frame = -1
Query: 454 QKLQIQAEMLELEKQRLKWQRFSKKKDRELEKMKLENERMKLENERIALELKRKEIG 284
+KLQIQAEM+ELE+Q+ KW+ FSK+++++L KM++ENERMKLENER++LELKR E+G
Sbjct: 326 RKLQIQAEMMELERQQFKWEVFSKRREQKLAKMRMENERMKLENERMSLELKRIELG 382
>gb|AAK69274.1| unknown [Glycine max]
Length = 408
Score = 69.7 bits (169), Expect = 1e-11
Identities = 33/56 (58%), Positives = 43/56 (75%)
Frame = -1
Query: 454 QKLQIQAEMLELEKQRLKWQRFSKKKDRELEKMKLENERMKLENERIALELKRKEI 287
Q++ Q + ELEKQRLKW RFS KK+RE+EK KL+NER +LE ER+ L L+ KE+
Sbjct: 324 QQVSYQMQAFELEKQRLKWARFSSKKEREMEKDKLQNERRRLEIERMVLLLRHKEL 379
>ref|NP_187615.1| unknown protein; protein id: At3g10040.1 [Arabidopsis thaliana]
gi|6143872|gb|AAF04419.1|AC010927_12 unknown protein
[Arabidopsis thaliana]
Length = 418
Score = 65.1 bits (157), Expect = 3e-10
Identities = 29/56 (51%), Positives = 43/56 (76%)
Frame = -1
Query: 454 QKLQIQAEMLELEKQRLKWQRFSKKKDRELEKMKLENERMKLENERIALELKRKEI 287
+K+ + E +E+EKQR+KW R+ KK+RE+EK KL+N+R +LE ER+ L L+R EI
Sbjct: 344 KKIGYEWEGVEMEKQRVKWMRYRSKKEREMEKAKLDNQRRRLETERMILMLRRSEI 399
>gb|AAM13849.2| unknown protein [Arabidopsis thaliana]
Length = 431
Score = 65.1 bits (157), Expect = 3e-10
Identities = 29/56 (51%), Positives = 43/56 (76%)
Frame = -1
Query: 454 QKLQIQAEMLELEKQRLKWQRFSKKKDRELEKMKLENERMKLENERIALELKRKEI 287
+K+ + E +E+EKQR+KW R+ KK+RE+EK KL+N+R +LE ER+ L L+R EI
Sbjct: 357 KKIGYEWEGVEMEKQRVKWMRYRSKKEREMEKAKLDNQRRRLETERMILMLRRSEI 412
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 330,350,684
Number of Sequences: 1393205
Number of extensions: 6194283
Number of successful extensions: 23783
Number of sequences better than 10.0: 307
Number of HSP's better than 10.0 without gapping: 20780
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23386
length of database: 448,689,247
effective HSP length: 112
effective length of database: 292,650,287
effective search space used: 11413361193
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
