Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC012628A_C01 KMC012628A_c01
(796 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_568944.1| copine - like protein; protein id: At5g61900.1,... 197 1e-49
gb|AAK98797.1| BONZAI1 [Arabidopsis thaliana] 197 1e-49
pir||T49869 copine-like protein - Arabidopsis thaliana gi|757616... 188 9e-47
ref|NP_568180.1| copine-like protein; protein id: At5g07300.1, s... 188 9e-47
ref|NP_172362.1| hypothetical protein; protein id: At1g08860.1 [... 165 6e-40
>ref|NP_568944.1| copine - like protein; protein id: At5g61900.1, supported by cDNA:
146738., supported by cDNA: gi_15487381, supported by
cDNA: gi_17065495 [Arabidopsis thaliana]
gi|9758389|dbj|BAB08876.1| copine-like protein
[Arabidopsis thaliana] gi|17065496|gb|AAL32902.1|
copine-like protein [Arabidopsis thaliana]
gi|21553477|gb|AAM62570.1| copine-like protein
[Arabidopsis thaliana]
Length = 578
Score = 197 bits (501), Expect = 1e-49
Identities = 105/128 (82%), Positives = 116/128 (90%)
Frame = -2
Query: 795 PVISNAALIASQSVANGGRKYFVLLIITDGVVTDLQETKDALVKASDLPLSILIVGVGGA 616
PVI+ AA+IAS S+A G RKY+VLLIITDGV+TDLQETKDALV ASDLPLSILIVGVGGA
Sbjct: 449 PVINAAAMIASASLAQGSRKYYVLLIITDGVITDLQETKDALVSASDLPLSILIVGVGGA 508
Query: 615 DFKEMEQILDADKGDRLESSYGRIASRDIVQFVPFRDVQSGEISVVQALLAELPTQFLAY 436
DFKEME ILDADKG+RLESS GR+ASRDIVQFV RDVQ GEISVVQALLAELP+QFL Y
Sbjct: 509 DFKEME-ILDADKGERLESSSGRLASRDIVQFVALRDVQYGEISVVQALLAELPSQFLTY 567
Query: 435 MRSRDIQP 412
MR R+++P
Sbjct: 568 MRIRNMKP 575
>gb|AAK98797.1| BONZAI1 [Arabidopsis thaliana]
Length = 578
Score = 197 bits (501), Expect = 1e-49
Identities = 105/128 (82%), Positives = 116/128 (90%)
Frame = -2
Query: 795 PVISNAALIASQSVANGGRKYFVLLIITDGVVTDLQETKDALVKASDLPLSILIVGVGGA 616
PVI+ AA+IAS S+A G RKY+VLLIITDGV+TDLQETKDALV ASDLPLSILIVGVGGA
Sbjct: 449 PVINAAAMIASASLAQGSRKYYVLLIITDGVITDLQETKDALVSASDLPLSILIVGVGGA 508
Query: 615 DFKEMEQILDADKGDRLESSYGRIASRDIVQFVPFRDVQSGEISVVQALLAELPTQFLAY 436
DFKEME ILDADKG+RLESS GR+ASRDIVQFV RDVQ GEISVVQALLAELP+QFL Y
Sbjct: 509 DFKEME-ILDADKGERLESSSGRLASRDIVQFVALRDVQYGEISVVQALLAELPSQFLTY 567
Query: 435 MRSRDIQP 412
MR R+++P
Sbjct: 568 MRIRNMKP 575
>pir||T49869 copine-like protein - Arabidopsis thaliana
gi|7576168|emb|CAB87919.1| copine-like protein
[Arabidopsis thaliana]
Length = 604
Score = 188 bits (477), Expect = 9e-47
Identities = 96/129 (74%), Positives = 114/129 (87%)
Frame = -2
Query: 795 PVISNAALIASQSVANGGRKYFVLLIITDGVVTDLQETKDALVKASDLPLSILIVGVGGA 616
PVI+ AA IAS S+A +KY+VLLIITDGV+TDLQET+D++V ASDLPLSILIVGVGGA
Sbjct: 470 PVINAAATIASDSLAQSAKKYYVLLIITDGVITDLQETRDSIVSASDLPLSILIVGVGGA 529
Query: 615 DFKEMEQILDADKGDRLESSYGRIASRDIVQFVPFRDVQSGEISVVQALLAELPTQFLAY 436
D+KEME +LD DKG++LESS GRIASRDIVQFV RD+Q GE+SVV+ALLAELPTQFL Y
Sbjct: 530 DYKEME-VLDGDKGEKLESSSGRIASRDIVQFVALRDIQYGEVSVVEALLAELPTQFLTY 588
Query: 435 MRSRDIQPS 409
MR+R+I P+
Sbjct: 589 MRNRNITPT 597
>ref|NP_568180.1| copine-like protein; protein id: At5g07300.1, supported by cDNA:
gi_14488103 [Arabidopsis thaliana]
gi|14488104|gb|AAK63871.1|AF389301_1 AT5g07300/T2I1_10
[Arabidopsis thaliana]
Length = 586
Score = 188 bits (477), Expect = 9e-47
Identities = 96/129 (74%), Positives = 114/129 (87%)
Frame = -2
Query: 795 PVISNAALIASQSVANGGRKYFVLLIITDGVVTDLQETKDALVKASDLPLSILIVGVGGA 616
PVI+ AA IAS S+A +KY+VLLIITDGV+TDLQET+D++V ASDLPLSILIVGVGGA
Sbjct: 452 PVINAAATIASDSLAQSAKKYYVLLIITDGVITDLQETRDSIVSASDLPLSILIVGVGGA 511
Query: 615 DFKEMEQILDADKGDRLESSYGRIASRDIVQFVPFRDVQSGEISVVQALLAELPTQFLAY 436
D+KEME +LD DKG++LESS GRIASRDIVQFV RD+Q GE+SVV+ALLAELPTQFL Y
Sbjct: 512 DYKEME-VLDGDKGEKLESSSGRIASRDIVQFVALRDIQYGEVSVVEALLAELPTQFLTY 570
Query: 435 MRSRDIQPS 409
MR+R+I P+
Sbjct: 571 MRNRNITPT 579
>ref|NP_172362.1| hypothetical protein; protein id: At1g08860.1 [Arabidopsis
thaliana] gi|25363277|pir||D86220 hypothetical protein
[imported] - Arabidopsis thaliana
gi|2342690|gb|AAB70417.1| Similar to Homo copine I
(gb|U83246). [Arabidopsis thaliana]
Length = 644
Score = 165 bits (418), Expect = 6e-40
Identities = 88/127 (69%), Positives = 102/127 (80%)
Frame = -2
Query: 792 VISNAALIASQSVANGGRKYFVLLIITDGVVTDLQETKDALVKASDLPLSILIVGVGGAD 613
V+ AA ASQS++ KYFVLLIITDGV+TD+ T DALV+ASDLPLS+LIVGVG D
Sbjct: 513 VVDKAAHTASQSLSQNSPKYFVLLIITDGVLTDMAGTVDALVRASDLPLSVLIVGVGNTD 572
Query: 612 FKEMEQILDADKGDRLESSYGRIASRDIVQFVPFRDVQSGEISVVQALLAELPTQFLAYM 433
FK+ME +LDAD G RLESS GRIA+RDIVQFVP +D+ SG +SVVQALL ELP QFL Y+
Sbjct: 573 FKQME-MLDADNGRRLESSTGRIATRDIVQFVPMKDIHSGLVSVVQALLEELPGQFLTYV 631
Query: 432 RSRDIQP 412
RSR I P
Sbjct: 632 RSRKINP 638
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 673,112,069
Number of Sequences: 1393205
Number of extensions: 14262911
Number of successful extensions: 34928
Number of sequences better than 10.0: 98
Number of HSP's better than 10.0 without gapping: 33567
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34829
length of database: 448,689,247
effective HSP length: 121
effective length of database: 280,111,442
effective search space used: 40055936206
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
