Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC012627A_C01 KMC012627A_c01
(473 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_193484.1| carboxyl-terminal proteinase like protein; prot... 103 9e-22
emb|CAC39056.1| putative protein [Oryza sativa] 100 1e-20
ref|XP_215960.1| similar to ubiqutin carboxyl-terminal hydrolase... 70 1e-11
ref|NP_057932.1| ubiquitin carboxyl-terminal esterase L3 (ubiqui... 70 1e-11
ref|XP_193192.1| ubiquitin carboxyl-terminal esterase L3 (ubiqui... 70 1e-11
>ref|NP_193484.1| carboxyl-terminal proteinase like protein; protein id: At4g17510.1
[Arabidopsis thaliana] gi|26452816|dbj|BAC43488.1|
putative carboxyl-terminal proteinase [Arabidopsis
thaliana] gi|28973167|gb|AAO63908.1| putative
carboxyl-terminal proteinase [Arabidopsis thaliana]
Length = 234
Score = 103 bits (257), Expect = 9e-22
Identities = 45/67 (67%), Positives = 59/67 (87%)
Frame = -2
Query: 472 NVDTHFICFACIDGELYELDGRKSAPISHGPSSPSTLLRDASKAIPSMIKENPNSLHFNV 293
+ DTHFIC AC++GELYELDGRK+ PISHG SSP+TLL+DA+K I MI++NP SL+FN+
Sbjct: 168 DADTHFICLACVEGELYELDGRKAGPISHGASSPATLLKDATKVIKKMIEKNPGSLNFNL 227
Query: 292 IALSKKS 272
IA+SK++
Sbjct: 228 IAISKRT 234
>emb|CAC39056.1| putative protein [Oryza sativa]
Length = 227
Score = 100 bits (248), Expect = 1e-20
Identities = 44/64 (68%), Positives = 55/64 (85%)
Frame = -2
Query: 469 VDTHFICFACIDGELYELDGRKSAPISHGPSSPSTLLRDASKAIPSMIKENPNSLHFNVI 290
V+ HF+CF+C+DGELYELDGRKS PI HGPSSP TLL+DA+K I + I NP+S++FNV+
Sbjct: 162 VNEHFVCFSCVDGELYELDGRKSQPICHGPSSPDTLLQDAAKVIKARIASNPDSMNFNVM 221
Query: 289 ALSK 278
ALSK
Sbjct: 222 ALSK 225
>ref|XP_215960.1| similar to ubiqutin carboxyl-terminal hydrolase l3 [Rattus
norvegicus] gi|13928523|dbj|BAB47136.1| ubiqutin
carboxyl-terminal hydrolase l3 [Rattus norvegicus]
Length = 230
Score = 70.1 bits (170), Expect = 1e-11
Identities = 33/63 (52%), Positives = 41/63 (64%)
Frame = -2
Query: 469 VDTHFICFACIDGELYELDGRKSAPISHGPSSPSTLLRDASKAIPSMIKENPNSLHFNVI 290
VD HFI +DG LYELDGRK PI+HG +S TLL DA + ++ +P+ L FN I
Sbjct: 166 VDLHFIALVHVDGHLYELDGRKPFPINHGKTSDETLLEDAIEVCKKFMERDPDELRFNAI 225
Query: 289 ALS 281
ALS
Sbjct: 226 ALS 228
>ref|NP_057932.1| ubiquitin carboxyl-terminal esterase L3 (ubiquitin thiolesterase)
[Mus musculus] gi|7578956|gb|AAF64193.1|AF247358_1
ubiquitin C-terminal hydrolase L3 [Mus musculus]
Length = 230
Score = 70.1 bits (170), Expect = 1e-11
Identities = 33/63 (52%), Positives = 40/63 (63%)
Frame = -2
Query: 469 VDTHFICFACIDGELYELDGRKSAPISHGPSSPSTLLRDASKAIPSMIKENPNSLHFNVI 290
VD HFI +DG LYELDGRK PI+HG +S TLL D K ++ +P+ L FN I
Sbjct: 166 VDLHFIALVHVDGHLYELDGRKPFPINHGKTSDETLLEDVIKVCKKFMERDPDELRFNAI 225
Query: 289 ALS 281
ALS
Sbjct: 226 ALS 228
>ref|XP_193192.1| ubiquitin carboxyl-terminal esterase L3 (ubiquitin thiolesterase)
[Mus musculus] gi|17380334|sp|Q9JKB1|UBL3_MOUSE
Ubiquitin carboxyl-terminal hydrolase isozyme L3
(UCH-L3) (Ubiquitin thiolesterase L3)
gi|25336590|pir||JC7688 ubiquitin carboxyl-terminal
hydrolase isozyme L3 - mouse gi|12248390|dbj|BAB20094.1|
UCH-L3 [Mus musculus] gi|28913414|gb|AAH48481.1|
ubiquitin carboxyl-terminal esterase L3 (ubiquitin
thiolesterase) [Mus musculus]
Length = 230
Score = 70.1 bits (170), Expect = 1e-11
Identities = 33/63 (52%), Positives = 41/63 (64%)
Frame = -2
Query: 469 VDTHFICFACIDGELYELDGRKSAPISHGPSSPSTLLRDASKAIPSMIKENPNSLHFNVI 290
VD HFI +DG LYELDGRK PI+HG +S TLL DA + ++ +P+ L FN I
Sbjct: 166 VDLHFIALVHVDGHLYELDGRKPFPINHGKTSDETLLEDAIEVCKKFMERDPDELRFNAI 225
Query: 289 ALS 281
ALS
Sbjct: 226 ALS 228
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 387,117,821
Number of Sequences: 1393205
Number of extensions: 7770374
Number of successful extensions: 17958
Number of sequences better than 10.0: 81
Number of HSP's better than 10.0 without gapping: 17690
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17954
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 12815311608
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
