Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC012616A_C01 KMC012616A_c01
(592 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAK43906.1|AF370587_1 Unknown protein [Arabidopsis thaliana] 175 4e-43
ref|NP_565459.1| expressed protein; protein id: At2g19800.1, sup... 175 4e-43
gb|AAM63498.1| unknown [Arabidopsis thaliana] 175 4e-43
gb|AAM61190.1| unknown [Arabidopsis thaliana] 174 1e-42
ref|NP_200475.1| putative protein; protein id: At5g56640.1, supp... 174 1e-42
>gb|AAK43906.1|AF370587_1 Unknown protein [Arabidopsis thaliana]
Length = 242
Score = 175 bits (443), Expect = 4e-43
Identities = 77/110 (70%), Positives = 92/110 (83%)
Frame = -3
Query: 590 NGIYAEGCGLDNVIISWGHDEYMHLVAKGNSNTLPSVALFIIRYHSFHPLYEAGAYKHLY 411
NG+Y EGCGLDNV++SWGHD+YM+LVAK N TLP LFIIRYHSF+PL++AGAY HL
Sbjct: 133 NGVYTEGCGLDNVLMSWGHDDYMYLVAKKNGTTLPHAGLFIIRYHSFYPLHKAGAYTHLM 192
Query: 410 SEEDVKNLKWLEIFH*YDLYSKSHVQIDVEQAKPYYMSLIEKYFPPKLKW 261
++ED +LKWL +F+ YDLYSKS V +DVEQ KPYY+SLI KYFP KLKW
Sbjct: 193 NDEDRDDLKWLHVFNKYDLYSKSKVLVDVEQVKPYYISLINKYFPAKLKW 242
>ref|NP_565459.1| expressed protein; protein id: At2g19800.1, supported by cDNA:
254633. [Arabidopsis thaliana]
gi|20197290|gb|AAC62136.2| expressed protein
[Arabidopsis thaliana]
Length = 317
Score = 175 bits (443), Expect = 4e-43
Identities = 77/110 (70%), Positives = 92/110 (83%)
Frame = -3
Query: 590 NGIYAEGCGLDNVIISWGHDEYMHLVAKGNSNTLPSVALFIIRYHSFHPLYEAGAYKHLY 411
NG+Y EGCGLDNV++SWGHD+YM+LVAK N TLP LFIIRYHSF+PL++AGAY HL
Sbjct: 208 NGVYTEGCGLDNVLMSWGHDDYMYLVAKKNGTTLPHAGLFIIRYHSFYPLHKAGAYTHLM 267
Query: 410 SEEDVKNLKWLEIFH*YDLYSKSHVQIDVEQAKPYYMSLIEKYFPPKLKW 261
++ED +LKWL +F+ YDLYSKS V +DVEQ KPYY+SLI KYFP KLKW
Sbjct: 268 NDEDRDDLKWLHVFNKYDLYSKSKVLVDVEQVKPYYISLINKYFPAKLKW 317
>gb|AAM63498.1| unknown [Arabidopsis thaliana]
Length = 317
Score = 175 bits (443), Expect = 4e-43
Identities = 77/110 (70%), Positives = 92/110 (83%)
Frame = -3
Query: 590 NGIYAEGCGLDNVIISWGHDEYMHLVAKGNSNTLPSVALFIIRYHSFHPLYEAGAYKHLY 411
NG+Y EGCGLDNV++SWGHD+YM+LVAK N TLP LFIIRYHSF+PL++AGAY HL
Sbjct: 208 NGVYTEGCGLDNVLMSWGHDDYMYLVAKKNGTTLPHAGLFIIRYHSFYPLHKAGAYTHLM 267
Query: 410 SEEDVKNLKWLEIFH*YDLYSKSHVQIDVEQAKPYYMSLIEKYFPPKLKW 261
++ED +LKWL +F+ YDLYSKS V +DVEQ KPYY+SLI KYFP KLKW
Sbjct: 268 NDEDRDDLKWLHVFNKYDLYSKSKVLVDVEQVKPYYISLINKYFPAKLKW 317
>gb|AAM61190.1| unknown [Arabidopsis thaliana]
Length = 314
Score = 174 bits (440), Expect = 1e-42
Identities = 76/109 (69%), Positives = 95/109 (86%)
Frame = -3
Query: 587 GIYAEGCGLDNVIISWGHDEYMHLVAKGNSNTLPSVALFIIRYHSFHPLYEAGAYKHLYS 408
GIY+EGCGL+NV++SWGHD+YM+LVAK N +TLPS LFIIRYHSF+PL++AGAY HL +
Sbjct: 206 GIYSEGCGLENVLMSWGHDDYMYLVAKENGSTLPSPGLFIIRYHSFYPLHKAGAYTHLMN 265
Query: 407 EEDVKNLKWLEIFH*YDLYSKSHVQIDVEQAKPYYMSLIEKYFPPKLKW 261
EED +NLKWL +F+ YDLYSKS V ++VE+ KPYYMSLI+KYFP L+W
Sbjct: 266 EEDKENLKWLHVFNKYDLYSKSKVHVNVEKVKPYYMSLIKKYFPENLRW 314
>ref|NP_200475.1| putative protein; protein id: At5g56640.1, supported by cDNA:
113619. [Arabidopsis thaliana]
gi|10176768|dbj|BAB09882.1|
gene_id:MIK19.9~pir||T06010~similar to unknown protein
[Arabidopsis thaliana]
Length = 314
Score = 174 bits (440), Expect = 1e-42
Identities = 76/109 (69%), Positives = 95/109 (86%)
Frame = -3
Query: 587 GIYAEGCGLDNVIISWGHDEYMHLVAKGNSNTLPSVALFIIRYHSFHPLYEAGAYKHLYS 408
GIY+EGCGL+NV++SWGHD+YM+LVAK N +TLPS LFIIRYHSF+PL++AGAY HL +
Sbjct: 206 GIYSEGCGLENVLMSWGHDDYMYLVAKENGSTLPSPGLFIIRYHSFYPLHKAGAYTHLMN 265
Query: 407 EEDVKNLKWLEIFH*YDLYSKSHVQIDVEQAKPYYMSLIEKYFPPKLKW 261
EED +NLKWL +F+ YDLYSKS V ++VE+ KPYYMSLI+KYFP L+W
Sbjct: 266 EEDKENLKWLHVFNKYDLYSKSKVHVNVEKVKPYYMSLIKKYFPENLRW 314
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 475,565,466
Number of Sequences: 1393205
Number of extensions: 9627922
Number of successful extensions: 21702
Number of sequences better than 10.0: 46
Number of HSP's better than 10.0 without gapping: 21122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21690
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 22569056698
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
