Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC012601A_C01 KMC012601A_c01
(576 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAC42294.1| unknown protein [Arabidopsis thaliana] 100 2e-20
ref|NP_171720.1| hypothetical protein; protein id: At1g02180.1 [... 98 7e-20
ref|NP_595130.1| putative MFS allantoate transporter [Schizosacc... 34 1.5
gb|EAA23021.1| hypothetical protein [Plasmodium yoelii yoelii] 33 2.0
ref|NP_619847.1| V057 [Cowpox virus] gi|20153044|gb|AAM13505.1|A... 32 5.7
>dbj|BAC42294.1| unknown protein [Arabidopsis thaliana]
Length = 226
Score = 99.8 bits (247), Expect = 2e-20
Identities = 52/135 (38%), Positives = 84/135 (61%)
Frame = +2
Query: 167 LVVILSFLHSASTGSAATNTQIKVTNNPADKLVAAINENRTAYKVSELYDNAGLACIALQ 346
L +IL FL +S +++ K+ N A ++V+ +N+NRTA K+ +L ++ GL C+ALQ
Sbjct: 8 LELILLFLSLSSVLASS-----KLHGNSAHEMVSILNQNRTARKLGKLNESPGLGCMALQ 62
Query: 347 YIKAYQGDCGAVGGPDAKKPPESQFAEVFAPNCGVKASSLAPITGRFLGCQTKYVHAPEA 526
Y++ +G+C V + + PE F +VFAPNCGV+ + ITG LGC +KY A
Sbjct: 63 YVELCEGNCN-VNNTLSCEHPEDDFTQVFAPNCGVELPTFGTITGHILGCSSKYAAPEVA 121
Query: 527 FSEVLIQNQRSLEIL 571
FS++L ++ +L +L
Sbjct: 122 FSDILFRDSSALSVL 136
>ref|NP_171720.1| hypothetical protein; protein id: At1g02180.1 [Arabidopsis
thaliana]
Length = 202
Score = 98.2 bits (243), Expect = 7e-20
Identities = 46/112 (41%), Positives = 72/112 (64%)
Frame = +2
Query: 236 VTNNPADKLVAAINENRTAYKVSELYDNAGLACIALQYIKAYQGDCGAVGGPDAKKPPES 415
V N A ++V+ +N+NRTA K+ +L ++ GL C+ALQY++ +G+C V + + PE
Sbjct: 2 VAGNSAHEMVSILNQNRTARKLGKLNESPGLGCMALQYVELCEGNCN-VNNTLSCEHPED 60
Query: 416 QFAEVFAPNCGVKASSLAPITGRFLGCQTKYVHAPEAFSEVLIQNQRSLEIL 571
F +VFAPNCGV+ + ITG LGC +KY AFS++L ++ +L +L
Sbjct: 61 DFTQVFAPNCGVELPTFGTITGHILGCSSKYAAPEVAFSDILFRDSSALSVL 112
>ref|NP_595130.1| putative MFS allantoate transporter [Schizosaccharomyces pombe]
gi|7492372|pir||T39680 probable allantoate permease -
fission yeast (Schizosaccharomyces pombe)
gi|3850093|emb|CAA21920.1| putative MFS allantoate
transporter [Schizosaccharomyces pombe]
Length = 497
Score = 33.9 bits (76), Expect = 1.5
Identities = 20/63 (31%), Positives = 28/63 (43%)
Frame = +3
Query: 144 QQQWQNCILWSSFPSFILLLQVLLQLILKSKLLITLRTSWSLRLMKTELLTRYQNYMTTR 323
Q W + F F L L LLQ SK+ +W + + T L+ Y +Y+ TR
Sbjct: 88 QYNWVGTSFYLGFMVFSLPLSTLLQKFPLSKVTSAFIVAWGILMTLTCLVHSYASYIATR 147
Query: 324 GLL 332
LL
Sbjct: 148 TLL 150
>gb|EAA23021.1| hypothetical protein [Plasmodium yoelii yoelii]
Length = 1525
Score = 33.5 bits (75), Expect = 2.0
Identities = 16/61 (26%), Positives = 25/61 (40%)
Frame = -3
Query: 280 FINRSDQLVRRVISNFDLSISCSRTCRSRMKEGKDDHKIQFCHCCCLRTQREVEDRSVLC 101
+IN QL I N L SCS C + E ++H +C C + ++C
Sbjct: 638 YINNYHQLENGDIMNVGLDNSCSNYCNNESNENSNNHSSTYCDGYCNGEYENCNNSGMVC 697
Query: 100 L 98
+
Sbjct: 698 V 698
>ref|NP_619847.1| V057 [Cowpox virus] gi|20153044|gb|AAM13505.1|AF482758_56 V057
[Cowpox virus]
Length = 634
Score = 32.0 bits (71), Expect = 5.7
Identities = 17/46 (36%), Positives = 24/46 (51%)
Frame = +1
Query: 61 LVDSLKQSLQINADITQICLQPLSVFSNSNNGKIVSCGHPFLPSFC 198
L+DS+K +NA T L+ L N NN I+S + F S+C
Sbjct: 546 LLDSIKMIYDLNAATTNNLLEQLIENINFNNSSIISLFYTFAISYC 591
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 516,016,092
Number of Sequences: 1393205
Number of extensions: 11176670
Number of successful extensions: 30668
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 29566
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30649
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 21530810025
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
