Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC012564A_C01 KMC012564A_c01
(491 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_564806.1| expressed protein; protein id: At1g63000.1, sup... 234 5e-61
ref|NP_188097.1| dTDP-glucose 4,6-dehydratase, putative; protein... 232 1e-60
gb|AAM65668.1| unknown [Arabidopsis thaliana] 231 3e-60
gb|AAK62450.1|AF387005_1 Unknown protein [Arabidopsis thaliana] 230 6e-60
ref|NP_564633.1| dTDP-D-glucose 4,6-dehydratase, putative; prote... 229 9e-60
>ref|NP_564806.1| expressed protein; protein id: At1g63000.1, supported by cDNA:
41505., supported by cDNA: gi_12083297, supported by
cDNA: gi_14423535 [Arabidopsis thaliana]
gi|25404387|pir||B96655 hypothetical protein F16P17.17
[imported] - Arabidopsis thaliana
gi|8493590|gb|AAF75813.1|AC011000_16 Contains weak
similarity to 5-epimerase from Saccharopolyspora
erythraea gb|L37354. ESTs gb|T41773, gb|R29767,
gb|T88368, gb|F13963 come from this gene. [Arabidopsis
thaliana] gi|12083298|gb|AAG48808.1|AF332445_1 unknown
protein [Arabidopsis thaliana]
Length = 301
Score = 234 bits (596), Expect = 5e-61
Identities = 105/144 (72%), Positives = 121/144 (83%)
Frame = +1
Query: 58 AKGGASGEKPLKFLIYGRTGWIGGRLGSLCRAQGIDFEYGSGRLENRASLETDIAEVKPT 237
A S FLIYG+TGWIGG LG LC AQGI + YGSGRL++R S+ DI VKP+
Sbjct: 3 ADANGSSSSSFNFLIYGKTGWIGGLLGKLCEAQGITYTYGSGRLQDRQSIVADIESVKPS 62
Query: 238 HVFNAAGVTGRPNVDWCETNKVETIRANVVGTLTLADVCRERGIIVVNFATGCIFEYDSG 417
HVFNAAGVTGRPNVDWCE++KVETIR NV GTLTLAD+CRE+G++++N+ATGCIFEYDSG
Sbjct: 63 HVFNAAGVTGRPNVDWCESHKVETIRTNVAGTLTLADICREKGLVLINYATGCIFEYDSG 122
Query: 418 HPLGSGIGFKEEDSPNFIGSFYSK 489
HPLGSGIGFKEED+PNF GSFYSK
Sbjct: 123 HPLGSGIGFKEEDTPNFTGSFYSK 146
>ref|NP_188097.1| dTDP-glucose 4,6-dehydratase, putative; protein id: At3g14790.1,
supported by cDNA: gi_19310442 [Arabidopsis thaliana]
gi|11994590|dbj|BAB02645.1| gene_id:T21E2.5~similar to
dTDP-D-glucose 4,6-dehydratase [Arabidopsis thaliana]
gi|19310443|gb|AAL84958.1| AT3g14790/T21E2_4
[Arabidopsis thaliana] gi|22655464|gb|AAM98324.1|
At3g14790/T21E2_4 [Arabidopsis thaliana]
Length = 664
Score = 232 bits (592), Expect = 1e-60
Identities = 107/146 (73%), Positives = 122/146 (83%), Gaps = 1/146 (0%)
Frame = +1
Query: 55 PAKGGASGEK-PLKFLIYGRTGWIGGRLGSLCRAQGIDFEYGSGRLENRASLETDIAEVK 231
P K G SG+K LKFLIYG+TGW+GG LG LC QGI +EYG GRLE+RASL DI +K
Sbjct: 368 PTKAGCSGDKRSLKFLIYGKTGWLGGLLGKLCEKQGIPYEYGKGRLEDRASLIADIRSIK 427
Query: 232 PTHVFNAAGVTGRPNVDWCETNKVETIRANVVGTLTLADVCRERGIIVVNFATGCIFEYD 411
P+HVFNAAG+TGRPNVDWCE++K ETIR NV GTLTLADVCRE ++++NFATGCIFEYD
Sbjct: 428 PSHVFNAAGLTGRPNVDWCESHKTETIRVNVAGTLTLADVCRENDLLMMNFATGCIFEYD 487
Query: 412 SGHPLGSGIGFKEEDSPNFIGSFYSK 489
+ HP GSGIGFKEED PNF GSFYSK
Sbjct: 488 AAHPEGSGIGFKEEDKPNFTGSFYSK 513
>gb|AAM65668.1| unknown [Arabidopsis thaliana]
Length = 300
Score = 231 bits (589), Expect = 3e-60
Identities = 105/144 (72%), Positives = 123/144 (84%)
Frame = +1
Query: 58 AKGGASGEKPLKFLIYGRTGWIGGRLGSLCRAQGIDFEYGSGRLENRASLETDIAEVKPT 237
A G +S FLIYG+TGWIGG LG LC +QGI + YGSGRL++R S+ DI VKP+
Sbjct: 5 ANGSSSS---FNFLIYGKTGWIGGLLGKLCESQGISYTYGSGRLQDRQSIVADIESVKPS 61
Query: 238 HVFNAAGVTGRPNVDWCETNKVETIRANVVGTLTLADVCRERGIIVVNFATGCIFEYDSG 417
HVFNAAGVTGRPNVDWCE++KVETIR NV GTLTLAD+CRE+G++++N+ATGCIFEYDSG
Sbjct: 62 HVFNAAGVTGRPNVDWCESHKVETIRTNVAGTLTLADICREKGLVLINYATGCIFEYDSG 121
Query: 418 HPLGSGIGFKEEDSPNFIGSFYSK 489
HPLGSGIGFKEED+PNF GSFYSK
Sbjct: 122 HPLGSGIGFKEEDTPNFTGSFYSK 145
>gb|AAK62450.1|AF387005_1 Unknown protein [Arabidopsis thaliana]
Length = 301
Score = 230 bits (587), Expect = 6e-60
Identities = 104/144 (72%), Positives = 120/144 (83%)
Frame = +1
Query: 58 AKGGASGEKPLKFLIYGRTGWIGGRLGSLCRAQGIDFEYGSGRLENRASLETDIAEVKPT 237
A S FLIYG+TGWIGG LG LC AQGI + YGSGRL++R S+ DI VKP+
Sbjct: 3 ADANGSSSSSFNFLIYGKTGWIGGLLGKLCEAQGITYTYGSGRLQDRQSIVADIESVKPS 62
Query: 238 HVFNAAGVTGRPNVDWCETNKVETIRANVVGTLTLADVCRERGIIVVNFATGCIFEYDSG 417
HVFNAAGVTGRPNVDWCE++KVETIR NV GTLTLAD+CRE+G++++N+ATGCIFEYDSG
Sbjct: 63 HVFNAAGVTGRPNVDWCESHKVETIRTNVAGTLTLADICREKGLVLINYATGCIFEYDSG 122
Query: 418 HPLGSGIGFKEEDSPNFIGSFYSK 489
H LGSGIGFKEED+PNF GSFYSK
Sbjct: 123 HHLGSGIGFKEEDTPNFTGSFYSK 146
>ref|NP_564633.1| dTDP-D-glucose 4,6-dehydratase, putative; protein id: At1g53500.1,
supported by cDNA: gi_15081768 [Arabidopsis thaliana]
Length = 498
Score = 229 bits (585), Expect = 9e-60
Identities = 107/144 (74%), Positives = 121/144 (83%), Gaps = 1/144 (0%)
Frame = +1
Query: 61 KGGASGEKP-LKFLIYGRTGWIGGRLGSLCRAQGIDFEYGSGRLENRASLETDIAEVKPT 237
K G SG+K LKFLIYG+TGW+GG LG LC QGI +EYG GRLE+RASL DI +KPT
Sbjct: 204 KNGDSGDKASLKFLIYGKTGWLGGLLGKLCEKQGITYEYGKGRLEDRASLVADIRSIKPT 263
Query: 238 HVFNAAGVTGRPNVDWCETNKVETIRANVVGTLTLADVCRERGIIVVNFATGCIFEYDSG 417
HVFNAAG+TGRPNVDWCE++K ETIR NV GTLTLADVCRE ++++NFATGCIFEYD+
Sbjct: 264 HVFNAAGLTGRPNVDWCESHKPETIRVNVAGTLTLADVCRENDLLMMNFATGCIFEYDAT 323
Query: 418 HPLGSGIGFKEEDSPNFIGSFYSK 489
HP GSGIGFKEED PNF GSFYSK
Sbjct: 324 HPEGSGIGFKEEDKPNFFGSFYSK 347
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 479,731,771
Number of Sequences: 1393205
Number of extensions: 11815110
Number of successful extensions: 56929
Number of sequences better than 10.0: 437
Number of HSP's better than 10.0 without gapping: 48153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 54930
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 14203329973
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
