Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC012561A_C01 KMC012561A_c01
(559 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAA72125.1| annexin max4 [Oryzias latipes] 50 2e-05
dbj|BAA82372.1| hypothetical protein [Oryza sativa (japonica cul... 48 7e-05
gb|AAN83924.1| hypothetical protein [Aplysia californica] 46 3e-04
emb|CAD55197.1| putative membrane protein [Streptomyces coelicol... 44 0.002
ref|XP_217782.1| similar to Extensin 1 precursor (AtExt1) (AtExt... 43 0.002
>emb|CAA72125.1| annexin max4 [Oryzias latipes]
Length = 508
Score = 49.7 bits (117), Expect = 2e-05
Identities = 38/97 (39%), Positives = 44/97 (45%), Gaps = 4/97 (4%)
Frame = -3
Query: 554 YDAQRTGYDPQRGQGYDPQRGQGYDPQIGQGYDLQRGPAYDPSRAAGYDLQSRGVAGPPG 375
Y Q GY PQ G GY PQ G GY PQ G GY Q G Y P+ A GY + G G
Sbjct: 27 YPPQAGGYPPQAG-GYPPQAG-GYPPQAG-GYPPQAG-GYPPA-AGGYPPAAGGYPSAGG 81
Query: 374 HAPPVNNMPYGSSTPPSHSGG----GGGFDAARGWKP 276
+ P P + P +GG GG+ A G P
Sbjct: 82 YPPQAGGYPPAAGGYPPAAGGFPPQAGGYPAPSGGFP 118
>dbj|BAA82372.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
Length = 551
Score = 48.1 bits (113), Expect = 7e-05
Identities = 31/85 (36%), Positives = 40/85 (46%), Gaps = 6/85 (7%)
Frame = -3
Query: 548 AQRTGYDPQRGQGYDPQRGQGYDPQIGQGYDLQRGPA-YDPSRAAGYDLQSRGVAGPPGH 372
A RTG+DP RG YD R + G+D RG A Y+ + AGYD G
Sbjct: 223 APRTGFDPSRGNMYDASRIASFSSSKAGGHDASRGAAGYNSLKGAGYDPSKAPALGGQAT 282
Query: 371 APPVNNMP---YGS--STPPSHSGG 312
A + YGS +TPPS++ G
Sbjct: 283 AAAAHGSSADYYGSNQATPPSYAWG 307
>gb|AAN83924.1| hypothetical protein [Aplysia californica]
Length = 600
Score = 46.2 bits (108), Expect = 3e-04
Identities = 30/91 (32%), Positives = 40/91 (42%), Gaps = 3/91 (3%)
Frame = -3
Query: 545 QRTGYDPQRGQGYDPQRGQGYDPQIGQGYDLQRGPAYDPSRAAGYDLQSRGVAGPPGHAP 366
++TGY P +G GY P RG GY P G GY G Y P + Y G +
Sbjct: 172 KQTGYGPNKGIGYGPGRGIGYGPSHGIGYGPSHGIGYGPKGSRSYAPGYGQRIGYGYKSS 231
Query: 365 PVNNMPYG---SSTPPSHSGGGGGFDAARGW 282
N+ YG S++ S G G G+ G+
Sbjct: 232 YDQNIGYGYGSSNSRGSGYGHGNGYGQGYGY 262
>emb|CAD55197.1| putative membrane protein [Streptomyces coelicolor A3(2)]
Length = 335
Score = 43.5 bits (101), Expect = 0.002
Identities = 28/74 (37%), Positives = 30/74 (39%), Gaps = 1/74 (1%)
Frame = -3
Query: 527 PQRGQGYDPQRGQGYDPQIGQGYDLQRGPAYDPSRAAGYDLQ-SRGVAGPPGHAPPVNNM 351
PQ G GY Q P G GY Q P +A Y Q G P G PP
Sbjct: 33 PQPGYGYPQQTPPPQQP--GYGYPQQPQQGGVPPQAPPYGQQPGYGQQPPYGQQPPYGQQ 90
Query: 350 PYGSSTPPSHSGGG 309
PYG PP+ GGG
Sbjct: 91 PYGMPQPPATGGGG 104
>ref|XP_217782.1| similar to Extensin 1 precursor (AtExt1) (AtExt4) [Rattus
norvegicus]
Length = 485
Score = 43.1 bits (100), Expect = 0.002
Identities = 17/44 (38%), Positives = 28/44 (63%)
Frame = +2
Query: 404 VNHTQLLLMDHKQVLSANHNPDLSVDHSPDLSVDHSPDLSVDHS 535
+ H+ L+++H L H+P L ++HSP L +HSP L ++HS
Sbjct: 252 LEHSPPLVLEHSPSLVLEHSPPLVIEHSPPLVSEHSPPLVIEHS 295
Score = 43.1 bits (100), Expect = 0.002
Identities = 17/42 (40%), Positives = 28/42 (66%)
Frame = +2
Query: 410 HTQLLLMDHKQVLSANHNPDLSVDHSPDLSVDHSPDLSVDHS 535
H+ L+ +H L + H+P L ++HSP L ++HSP L ++HS
Sbjct: 230 HSPSLVSEHSPPLVSEHSPSLVLEHSPPLVLEHSPSLVLEHS 271
Score = 42.7 bits (99), Expect = 0.003
Identities = 17/42 (40%), Positives = 27/42 (63%)
Frame = +2
Query: 410 HTQLLLMDHKQVLSANHNPDLSVDHSPDLSVDHSPDLSVDHS 535
H+ L+++H L H+P L ++HSP L ++HSP L +HS
Sbjct: 246 HSPSLVLEHSPPLVLEHSPSLVLEHSPPLVIEHSPPLVSEHS 287
Score = 42.4 bits (98), Expect = 0.004
Identities = 17/42 (40%), Positives = 27/42 (63%)
Frame = +2
Query: 410 HTQLLLMDHKQVLSANHNPDLSVDHSPDLSVDHSPDLSVDHS 535
H+ L+ +H L H+P L ++HSP L ++HSP L ++HS
Sbjct: 238 HSPPLVSEHSPSLVLEHSPPLVLEHSPSLVLEHSPPLVIEHS 279
Score = 42.4 bits (98), Expect = 0.004
Identities = 17/44 (38%), Positives = 27/44 (60%)
Frame = +2
Query: 404 VNHTQLLLMDHKQVLSANHNPDLSVDHSPDLSVDHSPDLSVDHS 535
+ H+ L+ +H L + H+P L +HSP L +HSP L ++HS
Sbjct: 332 IEHSPSLVSEHSPPLVSEHSPSLVSEHSPPLVSEHSPPLVIEHS 375
Score = 42.0 bits (97), Expect = 0.005
Identities = 17/44 (38%), Positives = 27/44 (60%)
Frame = +2
Query: 404 VNHTQLLLMDHKQVLSANHNPDLSVDHSPDLSVDHSPDLSVDHS 535
+ H+ L+++H L H+P L +HSP L ++HSP L +HS
Sbjct: 260 LEHSPSLVLEHSPPLVIEHSPPLVSEHSPPLVIEHSPSLVSEHS 303
Score = 42.0 bits (97), Expect = 0.005
Identities = 17/44 (38%), Positives = 28/44 (63%)
Frame = +2
Query: 404 VNHTQLLLMDHKQVLSANHNPDLSVDHSPDLSVDHSPDLSVDHS 535
+ H+ L+++H L + H+P L ++HSP L +HSP L +HS
Sbjct: 268 LEHSPPLVIEHSPPLVSEHSPPLVIEHSPSLVSEHSPPLVSEHS 311
Score = 41.6 bits (96), Expect = 0.007
Identities = 17/42 (40%), Positives = 27/42 (63%)
Frame = +2
Query: 410 HTQLLLMDHKQVLSANHNPDLSVDHSPDLSVDHSPDLSVDHS 535
H+ L+ +H L + H+P L +HSP L ++HSP L ++HS
Sbjct: 222 HSPSLVSEHSPSLVSEHSPPLVSEHSPSLVLEHSPPLVLEHS 263
Score = 41.2 bits (95), Expect = 0.009
Identities = 17/42 (40%), Positives = 26/42 (61%)
Frame = +2
Query: 410 HTQLLLMDHKQVLSANHNPDLSVDHSPDLSVDHSPDLSVDHS 535
H+ L+ +H L + H+P L ++HSP L +HSP L +HS
Sbjct: 350 HSPSLVSEHSPPLVSEHSPPLVIEHSPSLVSEHSPPLVSEHS 391
Score = 40.8 bits (94), Expect = 0.011
Identities = 17/42 (40%), Positives = 26/42 (61%)
Frame = +2
Query: 410 HTQLLLMDHKQVLSANHNPDLSVDHSPDLSVDHSPDLSVDHS 535
H+ L+ +H L + H+P L +HSP L ++HSP L +HS
Sbjct: 342 HSPPLVSEHSPSLVSEHSPPLVSEHSPPLVIEHSPSLVSEHS 383
Score = 40.8 bits (94), Expect = 0.011
Identities = 20/49 (40%), Positives = 29/49 (58%), Gaps = 2/49 (4%)
Frame = +2
Query: 410 HTQLLLMDHKQVLSANHNPDLSVDHSPDLSVDHSPDLSVDHS--QFFEH 550
H+ L+++H L + H+P L +HSP L HSP L ++HS Q EH
Sbjct: 286 HSPPLVIEHSPSLVSEHSPPLVSEHSPPLVSGHSPPLVLEHSPPQVIEH 334
Score = 39.7 bits (91), Expect = 0.025
Identities = 15/44 (34%), Positives = 29/44 (65%)
Frame = +2
Query: 404 VNHTQLLLMDHKQVLSANHNPDLSVDHSPDLSVDHSPDLSVDHS 535
+ H+ L+++ + L + H+ L ++HSP L ++HSP L ++HS
Sbjct: 156 IEHSPSLVLEDRPSLVSEHSSSLVLEHSPSLVLEHSPPLVLEHS 199
Score = 39.7 bits (91), Expect = 0.025
Identities = 16/42 (38%), Positives = 26/42 (61%)
Frame = +2
Query: 410 HTQLLLMDHKQVLSANHNPDLSVDHSPDLSVDHSPDLSVDHS 535
H+ L+ +H L + H+P L ++HSP ++HSP L +HS
Sbjct: 302 HSPPLVSEHSPPLVSGHSPPLVLEHSPPQVIEHSPSLVSEHS 343
Score = 39.7 bits (91), Expect = 0.025
Identities = 16/44 (36%), Positives = 26/44 (58%)
Frame = +2
Query: 404 VNHTQLLLMDHKQVLSANHNPDLSVDHSPDLSVDHSPDLSVDHS 535
+ H+ L+ +H L + H+P L HSP L ++HSP ++HS
Sbjct: 292 IEHSPSLVSEHSPPLVSEHSPPLVSGHSPPLVLEHSPPQVIEHS 335
Score = 39.3 bits (90), Expect = 0.033
Identities = 16/38 (42%), Positives = 24/38 (63%)
Frame = +2
Query: 422 LLMDHKQVLSANHNPDLSVDHSPDLSVDHSPDLSVDHS 535
L+ +H L H+P L ++HSP L ++HSP L +HS
Sbjct: 170 LVSEHSSSLVLEHSPSLVLEHSPPLVLEHSPSLVSEHS 207
Score = 38.9 bits (89), Expect = 0.043
Identities = 16/42 (38%), Positives = 26/42 (61%)
Frame = +2
Query: 410 HTQLLLMDHKQVLSANHNPDLSVDHSPDLSVDHSPDLSVDHS 535
H+ L+++H L H+P L ++HSP L +HSP L ++S
Sbjct: 174 HSSSLVLEHSPSLVLEHSPPLVLEHSPSLVSEHSPPLVSEYS 215
Score = 38.5 bits (88), Expect = 0.056
Identities = 16/38 (42%), Positives = 24/38 (63%)
Frame = +2
Query: 422 LLMDHKQVLSANHNPDLSVDHSPDLSVDHSPDLSVDHS 535
L+ +H L + H+P L +HSP L +HSP L ++HS
Sbjct: 218 LVSEHSPSLVSEHSPSLVSEHSPPLVSEHSPSLVLEHS 255
Score = 38.1 bits (87), Expect = 0.074
Identities = 17/44 (38%), Positives = 24/44 (53%)
Frame = +2
Query: 404 VNHTQLLLMDHKQVLSANHNPDLSVDHSPDLSVDHSPDLSVDHS 535
+ H+ L+ +H L H+P L +HSP L +HSP L HS
Sbjct: 276 IEHSPPLVSEHSPPLVIEHSPSLVSEHSPPLVSEHSPPLVSGHS 319
Score = 38.1 bits (87), Expect = 0.074
Identities = 16/44 (36%), Positives = 27/44 (61%)
Frame = +2
Query: 404 VNHTQLLLMDHKQVLSANHNPDLSVDHSPDLSVDHSPDLSVDHS 535
+ H+ L+++H L + H+P L ++SP L +HSP L +HS
Sbjct: 188 LEHSPPLVLEHSPSLVSEHSPPLVSEYSPPLVSEHSPSLVSEHS 231
Score = 37.7 bits (86), Expect = 0.096
Identities = 16/44 (36%), Positives = 26/44 (58%)
Frame = +2
Query: 404 VNHTQLLLMDHKQVLSANHNPDLSVDHSPDLSVDHSPDLSVDHS 535
+ H+ L+++H L H+P L +HSP L ++SP L +HS
Sbjct: 180 LEHSPSLVLEHSPPLVLEHSPSLVSEHSPPLVSEYSPPLVSEHS 223
Score = 37.7 bits (86), Expect = 0.096
Identities = 16/44 (36%), Positives = 26/44 (58%)
Frame = +2
Query: 404 VNHTQLLLMDHKQVLSANHNPDLSVDHSPDLSVDHSPDLSVDHS 535
+ H+ L+ +H L + ++P L +HSP L +HSP L +HS
Sbjct: 196 LEHSPSLVSEHSPPLVSEYSPPLVSEHSPSLVSEHSPSLVSEHS 239
Score = 37.7 bits (86), Expect = 0.096
Identities = 16/44 (36%), Positives = 26/44 (58%)
Frame = +2
Query: 404 VNHTQLLLMDHKQVLSANHNPDLSVDHSPDLSVDHSPDLSVDHS 535
+ H+ +++H L + H+P L +HSP L +HSP L +HS
Sbjct: 324 LEHSPPQVIEHSPSLVSEHSPPLVSEHSPSLVSEHSPPLVSEHS 367
Score = 37.4 bits (85), Expect = 0.13
Identities = 16/42 (38%), Positives = 24/42 (57%)
Frame = +2
Query: 410 HTQLLLMDHKQVLSANHNPDLSVDHSPDLSVDHSPDLSVDHS 535
H+ L+++H H+P L +HSP L +HSP L +HS
Sbjct: 318 HSPPLVLEHSPPQVIEHSPSLVSEHSPPLVSEHSPSLVSEHS 359
Score = 37.0 bits (84), Expect = 0.16
Identities = 16/42 (38%), Positives = 25/42 (59%)
Frame = +2
Query: 410 HTQLLLMDHKQVLSANHNPDLSVDHSPDLSVDHSPDLSVDHS 535
H+ L+ ++ L + H+P L +HSP L +HSP L +HS
Sbjct: 206 HSPPLVSEYSPPLVSEHSPSLVSEHSPSLVSEHSPPLVSEHS 247
Score = 36.6 bits (83), Expect = 0.21
Identities = 16/42 (38%), Positives = 23/42 (54%)
Frame = +2
Query: 410 HTQLLLMDHKQVLSANHNPDLSVDHSPDLSVDHSPDLSVDHS 535
H+ L+ H L H+P ++HSP L +HSP L +HS
Sbjct: 310 HSPPLVSGHSPPLVLEHSPPQVIEHSPSLVSEHSPPLVSEHS 351
Score = 35.0 bits (79), Expect = 0.62
Identities = 15/42 (35%), Positives = 24/42 (56%)
Frame = +2
Query: 410 HTQLLLMDHKQVLSANHNPDLSVDHSPDLSVDHSPDLSVDHS 535
H+ L+++H L P L +HS L ++HSP L ++HS
Sbjct: 150 HSPPLVIEHSPSLVLEDRPSLVSEHSSSLVLEHSPSLVLEHS 191
Score = 34.7 bits (78), Expect = 0.81
Identities = 13/37 (35%), Positives = 23/37 (62%)
Frame = +2
Query: 425 LMDHKQVLSANHNPDLSVDHSPDLSVDHSPDLSVDHS 535
+++H L + H+P L ++HSP L ++ P L +HS
Sbjct: 139 VIEHSSSLVSEHSPPLVIEHSPSLVLEDRPSLVSEHS 175
Score = 34.7 bits (78), Expect = 0.81
Identities = 14/44 (31%), Positives = 24/44 (53%)
Frame = +2
Query: 404 VNHTQLLLMDHKQVLSANHNPDLSVDHSPDLSVDHSPDLSVDHS 535
+ H+ L+ +H L H+P L ++ P L +HS L ++HS
Sbjct: 140 IEHSSSLVSEHSPPLVIEHSPSLVLEDRPSLVSEHSSSLVLEHS 183
Score = 34.3 bits (77), Expect = 1.1
Identities = 16/45 (35%), Positives = 25/45 (55%)
Frame = +2
Query: 410 HTQLLLMDHKQVLSANHNPDLSVDHSPDLSVDHSPDLSVDHSQFF 544
H+ L+++H L + H+P L +HS L HSP L ++ S F
Sbjct: 366 HSPPLVIEHSPSLVSEHSPPLVSEHSSSLVSGHSPPLVLEDSPSF 410
Score = 34.3 bits (77), Expect = 1.1
Identities = 16/42 (38%), Positives = 22/42 (52%)
Frame = +2
Query: 410 HTQLLLMDHKQVLSANHNPDLSVDHSPDLSVDHSPDLSVDHS 535
H+ L+ +H L H+P L +HSP L +HS L HS
Sbjct: 358 HSPPLVSEHSPPLVIEHSPSLVSEHSPPLVSEHSSSLVSGHS 399
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 524,703,019
Number of Sequences: 1393205
Number of extensions: 12544135
Number of successful extensions: 59334
Number of sequences better than 10.0: 299
Number of HSP's better than 10.0 without gapping: 44750
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 56149
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19808345223
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
