Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC012538A_C01 KMC012538A_c01
(590 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB17204.1| OSJNBa0086P08.14 [Oryza sativa (japonica cultiva... 50 2e-05
ref|NP_565774.1| Expressed protein; protein id: At2g33845.1, sup... 48 1e-04
ref|NP_564202.1| expressed protein; protein id: At1g23750.1, sup... 47 2e-04
dbj|BAB89552.1| P0435B05.31 [Oryza sativa (japonica cultivar-gro... 46 3e-04
dbj|BAC22221.1| contains EST AU181579(C50456)~similar to Oryza s... 44 0.002
>dbj|BAB17204.1| OSJNBa0086P08.14 [Oryza sativa (japonica cultivar-group)]
Length = 141
Score = 50.1 bits (118), Expect = 2e-05
Identities = 23/25 (92%), Positives = 24/25 (96%)
Frame = -2
Query: 589 EPASFTVKEDNNLSLIEYELVNVVE 515
EPASFTVKEDNNLSL+EYELVNV E
Sbjct: 117 EPASFTVKEDNNLSLVEYELVNVTE 141
>ref|NP_565774.1| Expressed protein; protein id: At2g33845.1, supported by cDNA:
32001. [Arabidopsis thaliana] gi|20198312|gb|AAM15519.1|
Expressed protein [Arabidopsis thaliana]
gi|21592737|gb|AAM64686.1| unknown [Arabidopsis
thaliana] gi|22530954|gb|AAM96981.1| expressed protein
[Arabidopsis thaliana] gi|23198430|gb|AAN15742.1|
expressed protein [Arabidopsis thaliana]
Length = 182
Score = 47.8 bits (112), Expect = 1e-04
Identities = 22/25 (88%), Positives = 23/25 (92%)
Frame = -2
Query: 589 EPASFTVKEDNNLSLIEYELVNVVE 515
EPA TVKEDNNLSL+EYELVNVVE
Sbjct: 157 EPADITVKEDNNLSLVEYELVNVVE 181
>ref|NP_564202.1| expressed protein; protein id: At1g23750.1, supported by cDNA:
15450. [Arabidopsis thaliana] gi|25341929|pir||F86371
hypothetical protein F5O8.30 - Arabidopsis thaliana
gi|4056457|gb|AAC98030.1| ESTs gb|234051 and gb|F13722
come from this gene. [Arabidopsis thaliana]
gi|21553633|gb|AAM62726.1| unknown [Arabidopsis
thaliana] gi|27754651|gb|AAO22770.1| unknown protein
[Arabidopsis thaliana] gi|28394047|gb|AAO42431.1|
unknown protein [Arabidopsis thaliana]
Length = 137
Score = 46.6 bits (109), Expect = 2e-04
Identities = 22/25 (88%), Positives = 23/25 (92%)
Frame = -2
Query: 589 EPASFTVKEDNNLSLIEYELVNVVE 515
EPASF VKED N+SLIEYELVNVVE
Sbjct: 113 EPASFKVKEDTNMSLIEYELVNVVE 137
>dbj|BAB89552.1| P0435B05.31 [Oryza sativa (japonica cultivar-group)]
gi|20160745|dbj|BAB89686.1| P0503C12.10 [Oryza sativa
(japonica cultivar-group)]
Length = 262
Score = 46.2 bits (108), Expect = 3e-04
Identities = 21/23 (91%), Positives = 22/23 (95%)
Frame = -2
Query: 589 EPASFTVKEDNNLSLIEYELVNV 521
EPASF VKEDNNLSL+EYELVNV
Sbjct: 116 EPASFNVKEDNNLSLVEYELVNV 138
>dbj|BAC22221.1| contains EST AU181579(C50456)~similar to Oryza sativa chromosome 1,
OSJNBa0086P08.14~unknown protein [Oryza sativa (japonica
cultivar-group)]
Length = 165
Score = 43.9 bits (102), Expect = 0.002
Identities = 19/25 (76%), Positives = 24/25 (96%)
Frame = -2
Query: 589 EPASFTVKEDNNLSLIEYELVNVVE 515
+PASF VKEDNN+SL+EYELV+VV+
Sbjct: 139 DPASFQVKEDNNVSLVEYELVDVVD 163
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 498,637,586
Number of Sequences: 1393205
Number of extensions: 10595667
Number of successful extensions: 25914
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 25123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25883
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 22569056698
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
