Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC012535A_C01 KMC012535A_c01
(595 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_188517.1| hypothetical protein; protein id: At3g18870.1 [... 152 3e-36
gb|AAO37134.1| hypothetical protein [Arabidopsis thaliana] 103 2e-21
ref|NP_178405.1| predicted by genefinder and genscan; protein id... 103 2e-21
gb|AAO41872.1| unknown protein [Arabidopsis thaliana] 97 2e-19
ref|NP_181009.1| hypothetical protein; protein id: At2g34620.1 [... 97 2e-19
>ref|NP_188517.1| hypothetical protein; protein id: At3g18870.1 [Arabidopsis
thaliana] gi|9294696|dbj|BAB03096.1|
gb|AAC26693.1~gene_id:MCB22.4~similar to unknown protein
[Arabidopsis thaliana]
Length = 274
Score = 152 bits (384), Expect = 3e-36
Identities = 71/103 (68%), Positives = 85/103 (81%)
Frame = -1
Query: 595 LRVKVRFLEEDVGLSYEEAVNVCARLPAIFGYDVENNLWPKFAFLVEEMERDLEELKKFP 416
LR K+RFL+ +G +EEA VC R+PAIFGY VE+NL PKF FLV +MER+LEELKKFP
Sbjct: 172 LRAKMRFLKS-IGFEHEEAARVCGRIPAIFGYSVEDNLRPKFEFLVYDMERELEELKKFP 230
Query: 415 QYFGFSLEKRIVPRHFHLKERGVRIPLNRMLMWGDDKFYAKWK 287
QYF FSL KRI PRH+HLK++ VR+ L+RMLMWGD KFY+KWK
Sbjct: 231 QYFAFSLGKRIRPRHWHLKKKNVRVSLSRMLMWGDQKFYSKWK 273
>gb|AAO37134.1| hypothetical protein [Arabidopsis thaliana]
Length = 283
Score = 103 bits (257), Expect = 2e-21
Identities = 48/95 (50%), Positives = 65/95 (67%)
Frame = -1
Query: 586 KVRFLEEDVGLSYEEAVNVCARLPAIFGYDVENNLWPKFAFLVEEMERDLEELKKFPQYF 407
K+ +LEE +G + EE + R PA+ Y V+NNL PK F +EEM D++ELK+FPQYF
Sbjct: 174 KIEYLEEGLGFTREEVAKMVVRSPALLTYSVDNNLVPKVEFFIEEMRGDVKELKRFPQYF 233
Query: 406 GFSLEKRIVPRHFHLKERGVRIPLNRMLMWGDDKF 302
FSLE++I PRH LKE G+ +PL+ ML D +F
Sbjct: 234 SFSLERKIKPRHRLLKEHGILMPLSEMLKVSDGQF 268
>ref|NP_178405.1| predicted by genefinder and genscan; protein id: At2g03050.1
[Arabidopsis thaliana] gi|25410996|pir||G84443
hypothetical protein At2g03050 [imported] - Arabidopsis
thaliana gi|3461829|gb|AAC32923.1| predicted by
genefinder and genscan [Arabidopsis thaliana]
Length = 284
Score = 103 bits (257), Expect = 2e-21
Identities = 48/95 (50%), Positives = 65/95 (67%)
Frame = -1
Query: 586 KVRFLEEDVGLSYEEAVNVCARLPAIFGYDVENNLWPKFAFLVEEMERDLEELKKFPQYF 407
K+ +LEE +G + EE + R PA+ Y V+NNL PK F +EEM D++ELK+FPQYF
Sbjct: 175 KIEYLEEGLGFTREEVAKMVVRSPALLTYSVDNNLVPKVEFFIEEMRGDVKELKRFPQYF 234
Query: 406 GFSLEKRIVPRHFHLKERGVRIPLNRMLMWGDDKF 302
FSLE++I PRH LKE G+ +PL+ ML D +F
Sbjct: 235 SFSLERKIKPRHRLLKEHGILMPLSEMLKVSDGQF 269
>gb|AAO41872.1| unknown protein [Arabidopsis thaliana]
Length = 240
Score = 96.7 bits (239), Expect = 2e-19
Identities = 47/95 (49%), Positives = 64/95 (66%)
Frame = -1
Query: 586 KVRFLEEDVGLSYEEAVNVCARLPAIFGYDVENNLWPKFAFLVEEMERDLEELKKFPQYF 407
K+RFLE +G S EA+ + R PA+F + +ENN PK + + E++ LE LK+FPQYF
Sbjct: 134 KLRFLES-IGFSRPEAIGMILRCPALFTFSIENNFKPKLDYFMSEIKGKLENLKEFPQYF 192
Query: 406 GFSLEKRIVPRHFHLKERGVRIPLNRMLMWGDDKF 302
FSLEKRI PRH ERG+ +PL+ ML D++F
Sbjct: 193 AFSLEKRIKPRHLESMERGLELPLSLMLKSTDEEF 227
>ref|NP_181009.1| hypothetical protein; protein id: At2g34620.1 [Arabidopsis
thaliana] gi|25408339|pir||H84758 hypothetical protein
At2g34620 [imported] - Arabidopsis thaliana
gi|3128213|gb|AAC26693.1| hypothetical protein
[Arabidopsis thaliana]
Length = 303
Score = 96.7 bits (239), Expect = 2e-19
Identities = 47/95 (49%), Positives = 64/95 (66%)
Frame = -1
Query: 586 KVRFLEEDVGLSYEEAVNVCARLPAIFGYDVENNLWPKFAFLVEEMERDLEELKKFPQYF 407
K+RFLE +G S EA+ + R PA+F + +ENN PK + + E++ LE LK+FPQYF
Sbjct: 197 KLRFLES-IGFSRPEAIGMILRCPALFTFSIENNFKPKLDYFMSEIKGKLENLKEFPQYF 255
Query: 406 GFSLEKRIVPRHFHLKERGVRIPLNRMLMWGDDKF 302
FSLEKRI PRH ERG+ +PL+ ML D++F
Sbjct: 256 AFSLEKRIKPRHLESMERGLELPLSLMLKSTDEEF 290
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 551,998,668
Number of Sequences: 1393205
Number of extensions: 13926484
Number of successful extensions: 136536
Number of sequences better than 10.0: 2394
Number of HSP's better than 10.0 without gapping: 70388
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108256
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 22854740960
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
