>KMC012519A_C01 KMC012519A_c01
gtgttacggtaaatgaaccccatttctgttgaataatagctgggccgTCATAATATTTTC
CCTTTCATTTAAAACCAGCTGGTTAGGTTTAAAAGAACACAGGATATGGGCATTTTAATT
CCCAAAGAGAATATAAGTGTGGTTTACCATTTGAAAACATCAAGACAAGCACAATTTTTT
CAACTTTTCCCCGGCAGGTAATGGGAGCCGTGGACAAAGTCTTCACAACGAGGTGATCCA
CCAAAAAACACCTCAGGGAGAACCCCAATTATGTCAAAGGGCTCCGTGGAAGTCACTAGA
CAGAATTAATATCATCAAGCCAGGAAAGCATCTCCTTCGGGGAATCCGAGCAGCTCTTTC
ACATTCAAGATTCTCTCTTTCATCACCAATTCCCAGCTTTCCAGGTTCCCTCTTTCATCT
TCCCCTTCAGTGGCGGATGAAGCCCCTT

BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KMC012519A_C01 KMC012519A_c01
         (448 letters)

Database: nr 
           1,393,205 sequences; 448,689,247 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_186875.1| unknown protein; protein id: At3g02260.1 [Arabi...    51  3e-06
ref|NP_280300.1| Vng1476c [Halobacterium sp. NRC-1] gi|25410138|...    33  0.61
ref|XP_150723.1| hypothetical protein XP_150723 [Mus musculus] g...    32  2.3
ref|NP_572790.1| CG12720-PA [Drosophila melanogaster] gi|7292754...    32  2.3
ref|NP_700470.1| polyhomeotic-like 3; polyhomeotic 3 [Mus muscul...    32  2.3

>ref|NP_186875.1| unknown protein; protein id: At3g02260.1 [Arabidopsis thaliana]
            gi|6041792|gb|AAF02112.1|AC009755_5 unknown protein
            [Arabidopsis thaliana]
            gi|21779966|gb|AAM77595.1|AF507018_1 auxin transport
            protein; BIG [Arabidopsis thaliana]
          Length = 5079

 Score = 51.2 bits (121), Expect = 3e-06
 Identities = 30/80 (37%), Positives = 42/80 (52%), Gaps = 5/80 (6%)
 Frame = -3

Query: 428  EGEDERGNLESWELVMKERILNVKELLGFPEG-----DAFLA**Y*FCLVTSTEPFDIIG 264
            EG      LE WE+VMKE++LNVKE++GF +      D   +           E FDI+G
Sbjct: 5002 EGTSSGVELEPWEIVMKEKLLNVKEMIGFSKELISWLDEINS------ATDLQEAFDIVG 5055

Query: 263  VLPEVFFGGSPRCEDFVHGS 204
            VL +V   G  +C+ FV  +
Sbjct: 5056 VLADVLSEGVTQCDQFVRSA 5075

>ref|NP_280300.1| Vng1476c [Halobacterium sp. NRC-1] gi|25410138|pir||H84301
           hypothetical protein Vng1476c [imported] - Halobacterium
           sp. NRC-1 gi|10580974|gb|AAG19780.1| Vng1476c
           [Halobacterium sp. NRC-1]
          Length = 746

 Score = 33.5 bits (75), Expect = 0.61
 Identities = 23/75 (30%), Positives = 35/75 (46%)
 Frame = +1

Query: 217 KSSQRGDPPKNTSGRTPIMSKGSVEVTRQN*YHQARKASPSGNPSSSFTFKILSFITNSQ 396
           K    G+ P+ TSG   ++++   E  RQ  Y+  R      +P    T ++LSF+ NSQ
Sbjct: 487 KQYNGGEIPRTTSGVERVLAQMPTE-QRQRYYNDGRAHITVASPQDMTTGQVLSFLENSQ 545

Query: 397 LSRFPLSSSPSVADE 441
            S    +  P V  E
Sbjct: 546 ESLDYSNPPPGVTAE 560

>ref|XP_150723.1| hypothetical protein XP_150723 [Mus musculus]
           gi|28483486|ref|XP_288260.1| hypothetical protein
           XP_288260 [Mus musculus]
          Length = 218

 Score = 31.6 bits (70), Expect = 2.3
 Identities = 24/76 (31%), Positives = 34/76 (44%)
 Frame = +1

Query: 184 LFPGR*WEPWTKSSQRGDPPKNTSGRTPIMSKGSVEVTRQN*YHQARKASPSGNPSSSFT 363
           L PGR  +PW + S  G   K    R      G+V  + +    +A  ASP    +SS T
Sbjct: 121 LLPGR-TQPWFQVSGSGRHRKFRMSRIRFCPSGTVVWSLK----EANSASPKSQETSSLT 175

Query: 364 FKILSFITNSQLSRFP 411
               + ITN Q++  P
Sbjct: 176 VTCTTVITNPQVTGQP 191

>ref|NP_572790.1| CG12720-PA [Drosophila melanogaster] gi|7292754|gb|AAF48150.1|
           CG12720-PA [Drosophila melanogaster]
          Length = 314

 Score = 31.6 bits (70), Expect = 2.3
 Identities = 19/54 (35%), Positives = 27/54 (49%)
 Frame = +1

Query: 262 TPIMSKGSVEVTRQN*YHQARKASPSGNPSSSFTFKILSFITNSQLSRFPLSSS 423
           TP ++  + EVT     HQ R   P+G+P    T     + +N+ L  FP SSS
Sbjct: 30  TPTVTAAAPEVTYAQ-PHQQRSTMPAGSPLKVSTVSAGKYQSNANLGLFPNSSS 82

>ref|NP_700470.1| polyhomeotic-like 3; polyhomeotic 3 [Mus musculus]
           gi|23396011|emb|CAC93885.1| polyhomeotic 3 [Mus
           musculus]
          Length = 981

 Score = 31.6 bits (70), Expect = 2.3
 Identities = 31/111 (27%), Positives = 49/111 (43%)
 Frame = +1

Query: 94  RTQDMGILIPKENISVVYHLKTSRQAQFFQLFPGR*WEPWTKSSQRGDPPKNTSGRTPIM 273
           R+Q +G+L   +N S     K++ Q Q   +   +     +K SQR   P++  G +P +
Sbjct: 217 RSQKLGVLSSSQNGSP----KSAGQTQSLTICHNKTTVTSSKISQRDPSPESKKGGSPGL 272

Query: 274 SKGSVEVTRQN*YHQARKASPSGNPSSSFTFKILSFITNSQLSRFPLSSSP 426
              S  VTR +  HQ         P+S    +  S I + Q+   PL S P
Sbjct: 273 ESRSTAVTRTSSIHQLIA------PASYSPIQPHSLIKHQQI---PLHSPP 314

  Database: nr
    Posted date:  Apr 1, 2003  2:05 AM
  Number of letters in database: 448,689,247
  Number of sequences in database:  1,393,205
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 432,842,371
Number of Sequences: 1393205
Number of extensions: 9941387
Number of successful extensions: 23536
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 23017
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23516
length of database: 448,689,247
effective HSP length: 124
effective length of database: 275,931,827
effective search space used: 6622363848
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

EST assemble image

clone accession position 1 MPD082d06_f AV775380 1 431 2 SPD089f03_f BP051127 48 449

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