Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC012498A_C01 KMC012498A_c01
(646 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T06596 lipoxygenase (EC 1.13.11.12) 7 - soybean gi|1173642|... 311 5e-84
gb|AAD08697.1| lipoxygenase LoxN3 [Pisum sativum] 313 5e-84
sp|P38414|LOX1_LENCU Lipoxygenase gi|467565|emb|CAA50483.1| lipo... 311 1e-83
pir||S56655 lipoxygenase (EC 1.13.11.12) loxG - garden pea gi|54... 309 2e-83
pir||T07036 lipoxygenase (EC 1.13.11.12) L-5 - soybean gi|123694... 307 1e-82
>pir||T06596 lipoxygenase (EC 1.13.11.12) 7 - soybean gi|1173642|gb|AAC49159.1|
lipoxygenase gi|1588566|prf||2208476A lipoxygenase
Length = 856
Score = 311 bits (797), Expect = 5e-84
Identities = 149/186 (80%), Positives = 164/186 (88%)
Frame = +1
Query: 88 LAIELSKLSDSGNDKSGPESTVYTPAGQDADGTIWLLAKAYVIVNDSCYHQLVSHWLNTH 267
LAIELSK G ++ GP S VY P+ + + IWLLAKAYV+VNDSCYHQLVSHWLNTH
Sbjct: 463 LAIELSKPHPQG-EEYGPVSEVYVPSSEGVEAYIWLLAKAYVVVNDSCYHQLVSHWLNTH 521
Query: 268 AVVEPFIIATNRHLSVVHPIYKLLFPHYRDTMNINALARNVLVNAEGIIESTFLWGNYAL 447
AVVEPF+IATNRHLSVVHPIYKLLFPHYRDTMNIN+LAR LVNA+GIIE TFLWG YAL
Sbjct: 522 AVVEPFVIATNRHLSVVHPIYKLLFPHYRDTMNINSLARKSLVNADGIIEKTFLWGRYAL 581
Query: 448 EMSAVAYKDWNFTEQALPADLLKRGVAVEDPSAPHGIRLLIEDYPYAADGLEIWDAIKSW 627
EMSAV YKDW FT+QALP DL+KRGVAV+DPSAPHG+RLLIEDYPYA+DGLEIWDAIKSW
Sbjct: 582 EMSAVVYKDWVFTDQALPNDLVKRGVAVKDPSAPHGVRLLIEDYPYASDGLEIWDAIKSW 641
Query: 628 VGEYVN 645
V EYV+
Sbjct: 642 VQEYVS 647
>gb|AAD08697.1| lipoxygenase LoxN3 [Pisum sativum]
Length = 492
Score = 313 bits (801), Expect(2) = 5e-84
Identities = 153/197 (77%), Positives = 168/197 (84%)
Frame = +1
Query: 55 LFCSK*WNFEALAIELSKLSDSGNDKSGPESTVYTPAGQDADGTIWLLAKAYVIVNDSCY 234
LF + LAIELS G D GP S VY PAG+ + +IWLLAKA+V+VNDSCY
Sbjct: 88 LFLQDNGTLKPLAIELSTPHPQG-DSFGPVSKVYLPAGEGVEASIWLLAKAFVVVNDSCY 146
Query: 235 HQLVSHWLNTHAVVEPFIIATNRHLSVVHPIYKLLFPHYRDTMNINALARNVLVNAEGII 414
HQLVSHWLNTHAVVEPFIIATNRHLSVVHPI+KLL PHYRDTMNINALAR+VLVNAEGII
Sbjct: 147 HQLVSHWLNTHAVVEPFIIATNRHLSVVHPIHKLLLPHYRDTMNINALARDVLVNAEGII 206
Query: 415 ESTFLWGNYALEMSAVAYKDWNFTEQALPADLLKRGVAVEDPSAPHGIRLLIEDYPYAAD 594
ESTFLWGNYA+EMSAV YKDW FT+Q LP DL+KRGVAV+DPSAP+G+RLLIEDYPYA+D
Sbjct: 207 ESTFLWGNYAMEMSAVVYKDWVFTDQGLPNDLIKRGVAVKDPSAPYGLRLLIEDYPYASD 266
Query: 595 GLEIWDAIKSWVGEYVN 645
GLEIW AIKSWV EYVN
Sbjct: 267 GLEIWAAIKSWVEEYVN 283
Score = 20.8 bits (42), Expect(2) = 5e-84
Identities = 7/13 (53%), Positives = 11/13 (83%)
Frame = +3
Query: 30 TKAYASRTIILFK 68
TKAYA+RT++ +
Sbjct: 79 TKAYATRTVLFLQ 91
>sp|P38414|LOX1_LENCU Lipoxygenase gi|467565|emb|CAA50483.1| lipoxygenase [Lens culinaris]
Length = 866
Score = 311 bits (798), Expect(2) = 1e-83
Identities = 152/197 (77%), Positives = 166/197 (84%)
Frame = +1
Query: 55 LFCSK*WNFEALAIELSKLSDSGNDKSGPESTVYTPAGQDADGTIWLLAKAYVIVNDSCY 234
LF + LAIELS G D GP S VY PA + + +IWLLAKA+V+VNDSCY
Sbjct: 462 LFLQDNGTLKPLAIELSTPHPDG-DSFGPVSKVYLPASEGVEASIWLLAKAFVVVNDSCY 520
Query: 235 HQLVSHWLNTHAVVEPFIIATNRHLSVVHPIYKLLFPHYRDTMNINALARNVLVNAEGII 414
HQLVSHWLNTHAVVEPFIIATNRHLSVVHPI+KLL PHYRDTMNINALARNVLVNAEGII
Sbjct: 521 HQLVSHWLNTHAVVEPFIIATNRHLSVVHPIHKLLLPHYRDTMNINALARNVLVNAEGII 580
Query: 415 ESTFLWGNYALEMSAVAYKDWNFTEQALPADLLKRGVAVEDPSAPHGIRLLIEDYPYAAD 594
ESTFLWGNYA+EMSAV YKDW F +Q LP DL+KRGVAV+DPS+PHG+RLLIEDYPYA+D
Sbjct: 581 ESTFLWGNYAMEMSAVVYKDWVFPDQGLPNDLIKRGVAVKDPSSPHGVRLLIEDYPYASD 640
Query: 595 GLEIWDAIKSWVGEYVN 645
GLEIW AIKSWV EYVN
Sbjct: 641 GLEIWAAIKSWVEEYVN 657
Score = 20.8 bits (42), Expect(2) = 1e-83
Identities = 7/13 (53%), Positives = 11/13 (83%)
Frame = +3
Query: 30 TKAYASRTIILFK 68
TKAYA+RT++ +
Sbjct: 453 TKAYATRTVLFLQ 465
>pir||S56655 lipoxygenase (EC 1.13.11.12) loxG - garden pea
gi|541746|emb|CAA53730.1| lipoxygenase [Pisum sativum]
Length = 868
Score = 309 bits (792), Expect = 2e-83
Identities = 151/197 (76%), Positives = 165/197 (83%)
Frame = +1
Query: 55 LFCSK*WNFEALAIELSKLSDSGNDKSGPESTVYTPAGQDADGTIWLLAKAYVIVNDSCY 234
LF LAIELSK +D GP S VY PA + +G+IWLLAKAYV+VNDSCY
Sbjct: 464 LFLQNNGTLRPLAIELSKPRPQ-DDSYGPISEVYLPASEGVEGSIWLLAKAYVVVNDSCY 522
Query: 235 HQLVSHWLNTHAVVEPFIIATNRHLSVVHPIYKLLFPHYRDTMNINALARNVLVNAEGII 414
HQLVSHWLNTHAVVEPFIIATNRHLSVVHP++KLL PHYRDTMNIN+LARNVLVNAEGII
Sbjct: 523 HQLVSHWLNTHAVVEPFIIATNRHLSVVHPVHKLLLPHYRDTMNINSLARNVLVNAEGII 582
Query: 415 ESTFLWGNYALEMSAVAYKDWNFTEQALPADLLKRGVAVEDPSAPHGIRLLIEDYPYAAD 594
ESTFLWG Y+LE+SAV Y+DW FT Q LP DLLKRGVAV DP++PHGIRLLIEDYPYA+D
Sbjct: 583 ESTFLWGGYSLELSAVVYRDWVFTNQGLPNDLLKRGVAVVDPASPHGIRLLIEDYPYASD 642
Query: 595 GLEIWDAIKSWVGEYVN 645
GLEIW AIKSWV EYVN
Sbjct: 643 GLEIWAAIKSWVEEYVN 659
>pir||T07036 lipoxygenase (EC 1.13.11.12) L-5 - soybean gi|1236949|gb|AAB67732.1|
lipoxygenase L-5 [Glycine max]
Length = 853
Score = 307 bits (787), Expect(2) = 1e-82
Identities = 145/186 (77%), Positives = 164/186 (87%)
Frame = +1
Query: 88 LAIELSKLSDSGNDKSGPESTVYTPAGQDADGTIWLLAKAYVIVNDSCYHQLVSHWLNTH 267
LAIELSK G ++ GP S VY P+ + + IWLLAKAYV+VND+CYHQ++SHWLNTH
Sbjct: 460 LAIELSKPHPQG-EEYGPVSEVYVPSSEGVEAYIWLLAKAYVVVNDACYHQIISHWLNTH 518
Query: 268 AVVEPFIIATNRHLSVVHPIYKLLFPHYRDTMNINALARNVLVNAEGIIESTFLWGNYAL 447
AVVEPF+IATNRHLSVVHPIYKLLFPHYRDTMNIN+LAR LVNA+GIIE TFLWG Y+L
Sbjct: 519 AVVEPFVIATNRHLSVVHPIYKLLFPHYRDTMNINSLARKSLVNADGIIEKTFLWGRYSL 578
Query: 448 EMSAVAYKDWNFTEQALPADLLKRGVAVEDPSAPHGIRLLIEDYPYAADGLEIWDAIKSW 627
EMSAV YKDW FT+QALP DL+KRGVAV+DPSAPHG+RLLIEDYPYA+DGLEIWDAIKSW
Sbjct: 579 EMSAVIYKDWVFTDQALPNDLVKRGVAVKDPSAPHGVRLLIEDYPYASDGLEIWDAIKSW 638
Query: 628 VGEYVN 645
V EYV+
Sbjct: 639 VEEYVS 644
Score = 21.6 bits (44), Expect(2) = 1e-82
Identities = 7/11 (63%), Positives = 10/11 (90%)
Frame = +2
Query: 56 YFVQNDGTLKP 88
+F++NDGTL P
Sbjct: 449 FFLKNDGTLTP 459
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 554,023,708
Number of Sequences: 1393205
Number of extensions: 11740998
Number of successful extensions: 39063
Number of sequences better than 10.0: 244
Number of HSP's better than 10.0 without gapping: 37253
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38858
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 27291941472
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
