Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC012497A_C01 KMC012497A_c01
(632 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM65928.1| unknown [Arabidopsis thaliana] 215 3e-55
ref|NP_565409.1| expressed protein; protein id: At2g17230.1, sup... 215 3e-55
gb|AAL24269.1| AT5g51550/K17N15_10 [Arabidopsis thaliana] gi|216... 168 5e-41
ref|NP_199968.1| putative protein; protein id: At5g51550.1, supp... 168 6e-41
gb|AAM64823.1| unknown [Arabidopsis thaliana] 168 6e-41
>gb|AAM65928.1| unknown [Arabidopsis thaliana]
Length = 365
Score = 215 bits (548), Expect = 3e-55
Identities = 111/173 (64%), Positives = 136/173 (78%), Gaps = 8/173 (4%)
Frame = +3
Query: 135 NGEVQTLN-LNHPSK------FNPKLPLPPLRTLSSSKRFEGSSDLVKLKYHMGPVLSS- 290
N T+N LN PS NPKLP P +L+SSK+FEGSS+LV L+YHMGPVLSS
Sbjct: 34 NKHTATVNSLNIPSAAAEITLVNPKLP-PRSLSLTSSKKFEGSSNLVHLRYHMGPVLSSS 92
Query: 291 PINIYLIWYGNWAQPKKLVIKDFLRSISAAGVPSPSVADWWRTVSLYTDQTGANISRTVT 470
PINIY+IWYG W++P K +I+DFL SIS A PSPSV++WWRT SLYTDQTG+N+SR+V
Sbjct: 93 PINIYVIWYGQWSRPHKSLIRDFLNSISDAKAPSPSVSEWWRTASLYTDQTGSNVSRSVL 152
Query: 471 IAGEYAERKYSKGRHLTRLSVQDVIATAVRSKPCPVDHRKGIYLVLTSEDVTM 629
IAGEY++ KYS G+HLTRL++Q+VIA+A RS PVDH+ G+YLVLTS DVTM
Sbjct: 153 IAGEYSDSKYSHGQHLTRLTIQEVIASAARSASFPVDHKNGMYLVLTSHDVTM 205
>ref|NP_565409.1| expressed protein; protein id: At2g17230.1, supported by cDNA:
641., supported by cDNA: gi_16604329, supported by cDNA:
gi_19699195 [Arabidopsis thaliana]
gi|25371899|pir||F84549 hypothetical protein At2g17230
[imported] - Arabidopsis thaliana
gi|4584346|gb|AAD25141.1| expressed protein [Arabidopsis
thaliana] gi|16604330|gb|AAL24171.1| At2g17230/T23A1.9
[Arabidopsis thaliana] gi|19699196|gb|AAL90964.1|
At2g17230/T23A1.9 [Arabidopsis thaliana]
Length = 363
Score = 215 bits (548), Expect = 3e-55
Identities = 111/173 (64%), Positives = 136/173 (78%), Gaps = 8/173 (4%)
Frame = +3
Query: 135 NGEVQTLN-LNHPSK------FNPKLPLPPLRTLSSSKRFEGSSDLVKLKYHMGPVLSS- 290
N T+N LN PS NPKLP P +L+SSK+FEGSS+LV L+YHMGPVLSS
Sbjct: 32 NKHTATVNSLNIPSAAAEITLVNPKLP-PRSLSLTSSKKFEGSSNLVHLRYHMGPVLSSS 90
Query: 291 PINIYLIWYGNWAQPKKLVIKDFLRSISAAGVPSPSVADWWRTVSLYTDQTGANISRTVT 470
PINIY+IWYG W++P K +I+DFL SIS A PSPSV++WWRT SLYTDQTG+N+SR+V
Sbjct: 91 PINIYVIWYGQWSRPHKSLIRDFLNSISDAKAPSPSVSEWWRTASLYTDQTGSNVSRSVL 150
Query: 471 IAGEYAERKYSKGRHLTRLSVQDVIATAVRSKPCPVDHRKGIYLVLTSEDVTM 629
IAGEY++ KYS G+HLTRL++Q+VIA+A RS PVDH+ G+YLVLTS DVTM
Sbjct: 151 IAGEYSDSKYSHGQHLTRLTIQEVIASAARSASFPVDHKNGMYLVLTSHDVTM 203
>gb|AAL24269.1| AT5g51550/K17N15_10 [Arabidopsis thaliana]
gi|21655293|gb|AAM65358.1| AT5g51550/K17N15_10
[Arabidopsis thaliana]
Length = 337
Score = 168 bits (426), Expect = 5e-41
Identities = 88/188 (46%), Positives = 126/188 (66%), Gaps = 7/188 (3%)
Frame = +3
Query: 81 SPPLNLLLPLLLLFSATTNGEVQTLNLNHPSKFNPKLPLPPL-----RTLSSSKRFEGSS 245
S P+NL+L +L +F L P++ P PP + +SK+FEGSS
Sbjct: 3 SLPVNLVLTILTVF------------LTSPAQVIGYRPYPPKTNGSDQIFDASKKFEGSS 50
Query: 246 DLVKLKYHMGPVLSSPINIYLIWYGNWAQPKKLVIKDFLRSISAAGVPSPSVADWWRTVS 425
+LV+L+YHMGPVL++ I ++ IWYG W + +K +I++F+ SISA G PSV+ WW+TV
Sbjct: 51 NLVRLRYHMGPVLTNNITVHPIWYGTWQKSQKKIIREFINSISAVGSKHPSVSGWWKTVQ 110
Query: 426 LYTDQTGANISRTVTIAGEYAERKYSKGRHLTRLSVQDVIATAV--RSKPCPVDHRKGIY 599
LYTDQTG+NI+ TV + E +R YS G+ LTRLS+Q VI +AV RS+P PV+ + G+Y
Sbjct: 111 LYTDQTGSNITGTVRLGEEKNDRFYSHGKSLTRLSIQSVIKSAVTSRSRPLPVNPKSGLY 170
Query: 600 LVLTSEDV 623
L+LT++DV
Sbjct: 171 LLLTADDV 178
>ref|NP_199968.1| putative protein; protein id: At5g51550.1, supported by cDNA:
33455., supported by cDNA: gi_16226761, supported by
cDNA: gi_16604526 [Arabidopsis thaliana]
gi|9758197|dbj|BAB08671.1|
gb|AAD25141.1~gene_id:K17N15.10~similar to unknown
protein [Arabidopsis thaliana]
gi|16226762|gb|AAL16255.1|AF428325_1 AT5g51550/K17N15_10
[Arabidopsis thaliana]
Length = 337
Score = 168 bits (425), Expect = 6e-41
Identities = 88/188 (46%), Positives = 126/188 (66%), Gaps = 7/188 (3%)
Frame = +3
Query: 81 SPPLNLLLPLLLLFSATTNGEVQTLNLNHPSKFNPKLPLPPL-----RTLSSSKRFEGSS 245
S P+NL+L +L +F L P++ P PP + +SK+FEGSS
Sbjct: 3 SLPVNLVLTVLTVF------------LTSPAQVIGYRPYPPKTNGSDQIFDASKKFEGSS 50
Query: 246 DLVKLKYHMGPVLSSPINIYLIWYGNWAQPKKLVIKDFLRSISAAGVPSPSVADWWRTVS 425
+LV+L+YHMGPVL++ I ++ IWYG W + +K +I++F+ SISA G PSV+ WW+TV
Sbjct: 51 NLVRLRYHMGPVLTNNITVHPIWYGTWQKSQKKIIREFINSISAVGSKHPSVSGWWKTVQ 110
Query: 426 LYTDQTGANISRTVTIAGEYAERKYSKGRHLTRLSVQDVIATAV--RSKPCPVDHRKGIY 599
LYTDQTG+NI+ TV + E +R YS G+ LTRLS+Q VI +AV RS+P PV+ + G+Y
Sbjct: 111 LYTDQTGSNITGTVRLGEEKNDRFYSHGKSLTRLSIQSVIKSAVTSRSRPLPVNPKSGLY 170
Query: 600 LVLTSEDV 623
L+LT++DV
Sbjct: 171 LLLTADDV 178
>gb|AAM64823.1| unknown [Arabidopsis thaliana]
Length = 337
Score = 168 bits (425), Expect = 6e-41
Identities = 88/188 (46%), Positives = 126/188 (66%), Gaps = 7/188 (3%)
Frame = +3
Query: 81 SPPLNLLLPLLLLFSATTNGEVQTLNLNHPSKFNPKLPLPPL-----RTLSSSKRFEGSS 245
S P+NL+L +L +F L P++ P PP + +SK+FEGSS
Sbjct: 3 SLPVNLVLTVLTVF------------LTSPAQVIGYRPYPPKTNGSDQIFDASKKFEGSS 50
Query: 246 DLVKLKYHMGPVLSSPINIYLIWYGNWAQPKKLVIKDFLRSISAAGVPSPSVADWWRTVS 425
+LV+L+YHMGPVL++ I ++ IWYG W + +K +I++F+ SISA G PSV+ WW+TV
Sbjct: 51 NLVRLRYHMGPVLTNNITVHPIWYGTWQKSQKKIIREFINSISAVGSKHPSVSGWWKTVQ 110
Query: 426 LYTDQTGANISRTVTIAGEYAERKYSKGRHLTRLSVQDVIATAV--RSKPCPVDHRKGIY 599
LYTDQTG+NI+ TV + E +R YS G+ LTRLS+Q VI +AV RS+P PV+ + G+Y
Sbjct: 111 LYTDQTGSNITGTVRLGEEKNDRFYSHGKSLTRLSIQSVIKSAVTSRSRPLPVNPKSGLY 170
Query: 600 LVLTSEDV 623
L+LT++DV
Sbjct: 171 LLLTADDV 178
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.317 0.127 0.404
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 717,387,629
Number of Sequences: 1393205
Number of extensions: 22300007
Number of successful extensions: 263309
Number of sequences better than 10.0: 6873
Number of HSP's better than 10.0 without gapping: 107390
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 200089
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 26154777244
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
