Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC012489A_C01 KMC012489A_c01
(517 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_197570.1| putative protein; protein id: At5g20700.1 [Arab... 81 8e-15
pir||B96779 unknown protein F9E10.21 [imported] - Arabidopsis th... 74 1e-12
gb|AAM64456.1| unknown [Arabidopsis thaliana] 74 1e-12
ref|NP_565095.1| expressed protein; protein id: At1g74940.1, sup... 74 1e-12
ref|NP_564160.1| expressed protein; protein id: At1g22160.1, sup... 73 2e-12
>ref|NP_197570.1| putative protein; protein id: At5g20700.1 [Arabidopsis thaliana]
gi|26449772|dbj|BAC42009.1| unknown protein [Arabidopsis
thaliana]
Length = 248
Score = 80.9 bits (198), Expect = 8e-15
Identities = 35/43 (81%), Positives = 40/43 (92%)
Frame = -1
Query: 478 FLSSCHLCRKKLHGKDIYMYRGEKAFCSTECRSSQITMDERKE 350
FL+SC+LCRKKLHG+DI++YRGEKAFCSTECRSS I DERKE
Sbjct: 182 FLNSCYLCRKKLHGQDIFIYRGEKAFCSTECRSSHIANDERKE 224
>pir||B96779 unknown protein F9E10.21 [imported] - Arabidopsis thaliana
gi|5882729|gb|AAD55282.1|AC008263_13 ESTs gb|T04387,
gb|R84022 and gb|T42239 come from this gene.
[Arabidopsis thaliana]
gi|12323906|gb|AAG51932.1|AC013258_26 unknown protein;
57035-56302 [Arabidopsis thaliana]
Length = 206
Score = 73.9 bits (180), Expect = 1e-12
Identities = 33/54 (61%), Positives = 42/54 (77%)
Frame = -1
Query: 511 VKAESLFPTSDFLSSCHLCRKKLHGKDIYMYRGEKAFCSTECRSSQITMDERKE 350
++ +S+ ++FLSSC LC+KKL GKDIYMY+GE FCS ECRS QI DER+E
Sbjct: 123 IERQSVRGPTEFLSSCCLCKKKLQGKDIYMYKGEMGFCSAECRSVQIMNDERQE 176
>gb|AAM64456.1| unknown [Arabidopsis thaliana]
Length = 222
Score = 73.9 bits (180), Expect = 1e-12
Identities = 33/54 (61%), Positives = 42/54 (77%)
Frame = -1
Query: 511 VKAESLFPTSDFLSSCHLCRKKLHGKDIYMYRGEKAFCSTECRSSQITMDERKE 350
++ +S+ ++FLSSC LC+KKL GKDIYMY+GE FCS ECRS QI DER+E
Sbjct: 139 IERQSVRGPTEFLSSCCLCKKKLQGKDIYMYKGEMGFCSAECRSVQIMNDERQE 192
>ref|NP_565095.1| expressed protein; protein id: At1g74940.1, supported by cDNA:
24864. [Arabidopsis thaliana] gi|23306420|gb|AAN17437.1|
expressed protein [Arabidopsis thaliana]
gi|27311889|gb|AAO00910.1| expressed protein
[Arabidopsis thaliana]
Length = 222
Score = 73.9 bits (180), Expect = 1e-12
Identities = 33/54 (61%), Positives = 42/54 (77%)
Frame = -1
Query: 511 VKAESLFPTSDFLSSCHLCRKKLHGKDIYMYRGEKAFCSTECRSSQITMDERKE 350
++ +S+ ++FLSSC LC+KKL GKDIYMY+GE FCS ECRS QI DER+E
Sbjct: 139 IERQSVRGPTEFLSSCCLCKKKLQGKDIYMYKGEMGFCSAECRSVQIMNDERQE 192
>ref|NP_564160.1| expressed protein; protein id: At1g22160.1, supported by cDNA:
23788., supported by cDNA: gi_18252870 [Arabidopsis
thaliana] gi|18252871|gb|AAL62362.1| unknown protein
[Arabidopsis thaliana] gi|21387061|gb|AAM47934.1|
unknown protein [Arabidopsis thaliana]
gi|21592437|gb|AAM64388.1| unknown [Arabidopsis
thaliana]
Length = 147
Score = 72.8 bits (177), Expect = 2e-12
Identities = 32/47 (68%), Positives = 39/47 (82%), Gaps = 1/47 (2%)
Frame = -1
Query: 487 TSDFLSSCHLCRKKL-HGKDIYMYRGEKAFCSTECRSSQITMDERKE 350
+ DFL SC LC++ L HG+DIYMYRG++AFCS ECR QIT+DERKE
Sbjct: 75 SEDFLRSCSLCKRLLVHGRDIYMYRGDRAFCSLECRQQQITVDERKE 121
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 411,024,870
Number of Sequences: 1393205
Number of extensions: 8336617
Number of successful extensions: 22045
Number of sequences better than 10.0: 46
Number of HSP's better than 10.0 without gapping: 21360
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22014
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 16154357632
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
