Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC012463A_C01 KMC012463A_c01
(587 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAC20390.1| pancreatic beta-cell specific transcriptional ac... 46 4e-04
gb|EAA09315.1| agCP15009 [Anopheles gambiae str. PEST] 45 9e-04
ref|NP_191361.1| putative protein; protein id: At3g58020.1 [Arab... 44 0.002
gb|EAA13037.1| agCP14510 [Anopheles gambiae str. PEST] 44 0.002
gb|AAL89527.1| transcription factor mammalian MafA [Homo sapiens... 43 0.003
>dbj|BAC20390.1| pancreatic beta-cell specific transcriptional activator [Mus
musculus]
Length = 359
Score = 45.8 bits (107), Expect = 4e-04
Identities = 19/36 (52%), Positives = 22/36 (60%), Gaps = 3/36 (8%)
Frame = -1
Query: 407 GGGGIDMKGVLNFTG---DMLNHHQAHHYHHHHHHH 309
GGGG D G + G +HH AHH+HHHHHHH
Sbjct: 171 GGGGADDMGAGHHHGAHHTAHHHHSAHHHHHHHHHH 206
>gb|EAA09315.1| agCP15009 [Anopheles gambiae str. PEST]
Length = 617
Score = 44.7 bits (104), Expect = 9e-04
Identities = 20/48 (41%), Positives = 24/48 (49%)
Frame = -1
Query: 428 GLTEDADGGGGIDMKGVLNFTGDMLNHHQAHHYHHHHHHHRLLKPQEQ 285
G A GG KG +HH HH+HHHHHHHR + Q+Q
Sbjct: 173 GAGNTASSGGSSSSKG-------HHHHHHHHHHHHHHHHHRHKQQQQQ 213
Score = 37.4 bits (85), Expect = 0.14
Identities = 14/38 (36%), Positives = 17/38 (43%)
Frame = -1
Query: 422 TEDADGGGGIDMKGVLNFTGDMLNHHQAHHYHHHHHHH 309
T D GG + G + HH+HHHHHHH
Sbjct: 163 TRDKSSAGGSGAGNTASSGGSSSSKGHHHHHHHHHHHH 200
>ref|NP_191361.1| putative protein; protein id: At3g58020.1 [Arabidopsis thaliana]
gi|11357957|pir||T46024 hypothetical protein T10K17.230
- Arabidopsis thaliana gi|6729545|emb|CAB67630.1|
putative protein [Arabidopsis thaliana]
Length = 580
Score = 43.5 bits (101), Expect = 0.002
Identities = 17/32 (53%), Positives = 19/32 (59%)
Frame = -1
Query: 404 GGGIDMKGVLNFTGDMLNHHQAHHYHHHHHHH 309
GGG G + G NHH HH+HHHHHHH
Sbjct: 507 GGGRGRGGGVYAFGRHSNHHLHHHHHHHHHHH 538
>gb|EAA13037.1| agCP14510 [Anopheles gambiae str. PEST]
Length = 1157
Score = 43.5 bits (101), Expect = 0.002
Identities = 18/33 (54%), Positives = 21/33 (63%)
Frame = -1
Query: 413 ADGGGGIDMKGVLNFTGDMLNHHQAHHYHHHHH 315
A GG G+ G LN G + +H AHHYHHHHH
Sbjct: 1070 AGGGVGMMGDGNLNGVGGVYSHPHAHHYHHHHH 1102
>gb|AAL89527.1| transcription factor mammalian MafA [Homo sapiens]
gi|23503733|dbj|BAC20389.1| pancreatic beta-cell
specific transcriptional activator [Homo sapiens]
Length = 352
Score = 43.1 bits (100), Expect = 0.003
Identities = 18/35 (51%), Positives = 21/35 (59%), Gaps = 2/35 (5%)
Frame = -1
Query: 407 GGGGIDMKGVLNFTG--DMLNHHQAHHYHHHHHHH 309
GGGG D G + G +HH A H+HHHHHHH
Sbjct: 173 GGGGADDMGAGHHHGAHHAAHHHHAAHHHHHHHHH 207
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 540,327,069
Number of Sequences: 1393205
Number of extensions: 13222853
Number of successful extensions: 103597
Number of sequences better than 10.0: 872
Number of HSP's better than 10.0 without gapping: 56330
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83057
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 22283372436
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
