Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC012452A_C01 KMC012452A_c01
(581 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_197487.1| putative protein; protein id: At5g19870.1 [Arab... 99 9e-25
ref|NP_175919.1| unknown protein; protein id: At1g55230.1 [Arabi... 101 1e-23
ref|NP_175920.1| unknown protein; protein id: At1g55240.1 [Arabi... 100 2e-20
ref|NP_564546.1| expressed protein; protein id: At1g49470.1, sup... 46 4e-04
gb|AAM67111.1| unknown [Arabidopsis thaliana] 46 4e-04
>ref|NP_197487.1| putative protein; protein id: At5g19870.1 [Arabidopsis thaliana]
Length = 276
Score = 99.0 bits (245), Expect(2) = 9e-25
Identities = 45/85 (52%), Positives = 63/85 (73%)
Frame = -2
Query: 580 LLILVSLVTTLMGIGLPKSFMVGFVRSVCIVFQGVWLMVIGLMLTTPGFVAQGCSIPFKE 401
L++ VSLVTTL+GI LP SF++ FVRS+ + FQG+WLM + ML TP V + C + +E
Sbjct: 158 LVVFVSLVTTLLGIALPSSFILSFVRSLSVSFQGIWLMSMACMLWTPSLVPKDCFLHIEE 217
Query: 400 DPYLVKCSDDKALHRAVSLVNLPFT 326
+ ++CSD KALHRA+SLVN+ F+
Sbjct: 218 GKHTIRCSDVKALHRAISLVNIQFS 242
Score = 36.2 bits (82), Expect(2) = 9e-25
Identities = 18/34 (52%), Positives = 22/34 (63%)
Frame = -3
Query: 324 WLLIGVTIFAMSFYLIGVTTGRGYGEKVEYFSLR 223
W L+ +TIFAM FY+ R YGEK+EY LR
Sbjct: 243 WFLVIITIFAMWFYIF---LQRIYGEKIEYSQLR 273
>ref|NP_175919.1| unknown protein; protein id: At1g55230.1 [Arabidopsis thaliana]
gi|25405805|pir||B96594 unknown protein, 75526-74624
[imported] - Arabidopsis thaliana
gi|12323182|gb|AAG51578.1|AC027034_24 unknown protein;
75526-74624 [Arabidopsis thaliana]
Length = 300
Score = 101 bits (251), Expect(2) = 1e-23
Identities = 48/85 (56%), Positives = 63/85 (73%)
Frame = -2
Query: 580 LLILVSLVTTLMGIGLPKSFMVGFVRSVCIVFQGVWLMVIGLMLTTPGFVAQGCSIPFKE 401
L+I VS +TTL+GI LPKSF+V FVRS I FQGVW +V+G ML TP + +GC + +E
Sbjct: 159 LIIFVSFLTTLIGITLPKSFLVSFVRSSSITFQGVWFVVMGYMLWTPSLIPKGCFLHEEE 218
Query: 400 DPYLVKCSDDKALHRAVSLVNLPFT 326
++KCS DKA+HRA SLVN+ F+
Sbjct: 219 GHQVIKCSSDKAIHRAKSLVNIEFS 243
Score = 30.4 bits (67), Expect(2) = 1e-23
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = -3
Query: 324 WLLIGVTIFAMSFYLIGVTTGRGYGEKVEY 235
W +G+TIF MS +LI YGE EY
Sbjct: 244 WFFVGITIFVMSLFLI---LSGLYGENAEY 270
>ref|NP_175920.1| unknown protein; protein id: At1g55240.1 [Arabidopsis thaliana]
gi|25405807|pir||C96594 unknown protein, 73214-72236
[imported] - Arabidopsis thaliana
gi|12323179|gb|AAG51575.1|AC027034_21 unknown protein;
73214-72236 [Arabidopsis thaliana]
Length = 247
Score = 99.8 bits (247), Expect = 2e-20
Identities = 53/101 (52%), Positives = 72/101 (70%), Gaps = 1/101 (0%)
Frame = -2
Query: 580 LLILVSLVTTLMGIGLPKSFMVGFVRSVCIVFQGVWLMVIGLMLTTPGFVAQGCSIPFKE 401
++I VSL+TT+MGI LPKSF+V VRS I FQGVWL+VIG ML TP + +GC I +
Sbjct: 95 VVIFVSLLTTIMGIFLPKSFLVSLVRSSSIAFQGVWLIVIGCMLYTPSLIPKGCYIHDEG 154
Query: 400 DPYLVKCSDDKALHRAVSLVNLPFT-LVVDRSHYLCYVFLL 281
+VKCS ++ALHRA SLVNL F+ L V + ++ ++L+
Sbjct: 155 RHIIVKCSTEEALHRAKSLVNLEFSWLFVTNTLFVVTLYLI 195
Score = 31.2 bits (69), Expect = 9.9
Identities = 16/33 (48%), Positives = 20/33 (60%)
Frame = -3
Query: 324 WLLIGVTIFAMSFYLIGVTTGRGYGEKVEYFSL 226
WL + T+F ++ YLI R YGE VEY SL
Sbjct: 180 WLFVTNTLFVVTLYLI---LDRVYGENVEYSSL 209
>ref|NP_564546.1| expressed protein; protein id: At1g49470.1, supported by cDNA:
95546. [Arabidopsis thaliana] gi|25405312|pir||C96531
hypothetical protein F13F21.10 [imported] - Arabidopsis
thaliana gi|5430771|gb|AAD43171.1|AC007504_26 Unknown
Protein [Arabidopsis thaliana]
Length = 302
Score = 45.8 bits (107), Expect = 4e-04
Identities = 31/113 (27%), Positives = 47/113 (41%), Gaps = 10/113 (8%)
Frame = -2
Query: 580 LLILVSLVTTLMGIGLPKSFMVGFVRSVCIVFQGVWLMVIGLMLTTPGFVAQGCSIPF-- 407
L+ VS + L PKSF + ++FQG W + +G ML P +V +GC
Sbjct: 151 LIAFVSFSSALASASFPKSFSAALFLPISVMFQGCWFLNMGFMLWIPEYVPRGCVSNMST 210
Query: 406 -----KEDPY---LVKCSDDKALHRAVSLVNLPFTLVVDRSHYLCYVFLLNWS 272
+ Y V C A RA +L NL F+ ++ + L +S
Sbjct: 211 STDNNRRSVYHSGAVACESPGAEIRAKALANLQFSWMLSAILIITCALCLKYS 263
>gb|AAM67111.1| unknown [Arabidopsis thaliana]
Length = 302
Score = 45.8 bits (107), Expect = 4e-04
Identities = 29/95 (30%), Positives = 41/95 (42%), Gaps = 10/95 (10%)
Frame = -2
Query: 580 LLILVSLVTTLMGIGLPKSFMVGFVRSVCIVFQGVWLMVIGLMLTTPGFVAQGCSIPF-- 407
L+ VS + L PKSF + ++FQG W + +G ML P +V +GC
Sbjct: 151 LIAFVSFSSALASASFPKSFSAALFLPISVMFQGCWFLNMGFMLWVPEYVPRGCVSNMST 210
Query: 406 -----KEDPY---LVKCSDDKALHRAVSLVNLPFT 326
+ Y V C A RA +L NL F+
Sbjct: 211 STDNNRRSVYHSGAVACESPGAEIRAKALANLQFS 245
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 516,042,614
Number of Sequences: 1393205
Number of extensions: 11662982
Number of successful extensions: 25078
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 24370
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25066
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 21712003912
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
