Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC012446A_C01 KMC012446A_c01
(517 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_177984.1| ribosomal protein L13, putative; protein id: At... 142 2e-33
dbj|BAB56046.1| putative ribosomal protein L13 [Oryza sativa (ja... 134 5e-31
sp|P12629|RK13_SPIOL 50S RIBOSOMAL PROTEIN L13, CHLOROPLAST PREC... 133 1e-30
ref|NP_680899.1| 50S ribosomal protein L13 [Thermosynechococcus ... 117 1e-25
ref|NP_488228.1| 50S ribosomal protein L13 [Nostoc sp. PCC 7120]... 112 2e-24
>ref|NP_177984.1| ribosomal protein L13, putative; protein id: At1g78630.1, supported
by cDNA: 32373., supported by cDNA: gi_13878110,
supported by cDNA: gi_17104780 [Arabidopsis thaliana]
gi|25295170|pir||A96815 hypothetical protein T30F21.4
[imported] - Arabidopsis thaliana
gi|4836870|gb|AAD30573.1|AC007260_4 50S Ribosomal
protein L13 [Arabidopsis thaliana]
gi|7572938|emb|CAA60775.1| ribosomal protein L13
[Arabidopsis thaliana]
gi|13878111|gb|AAK44133.1|AF370318_1 putative ribosomal
protein L13 [Arabidopsis thaliana]
gi|17104781|gb|AAL34279.1| putative ribosomal protein
L13 [Arabidopsis thaliana]
Length = 241
Score = 142 bits (358), Expect = 2e-33
Identities = 66/78 (84%), Positives = 71/78 (90%)
Frame = -3
Query: 515 YRRHSGRPGGMKVETFSQLQNRIPERIIEHAVRGMLPKGRLGRDLFTPLKVYKGPDHPHA 336
YRRHSGRPGGM VETF QLQ RIPERI+EHAVRGMLPKGRLGR LF LKVYKGPDHPH
Sbjct: 164 YRRHSGRPGGMTVETFDQLQQRIPERIVEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHE 223
Query: 335 AQKPVDLPIRDKRIELKR 282
AQKP+DLPIRDKRI+L++
Sbjct: 224 AQKPLDLPIRDKRIQLQK 241
>dbj|BAB56046.1| putative ribosomal protein L13 [Oryza sativa (japonica
cultivar-group)]
Length = 233
Score = 134 bits (338), Expect = 5e-31
Identities = 64/75 (85%), Positives = 67/75 (89%)
Frame = -3
Query: 515 YRRHSGRPGGMKVETFSQLQNRIPERIIEHAVRGMLPKGRLGRDLFTPLKVYKGPDHPHA 336
YRRHSGRPGGMK ETF QLQ RIPERIIEHAVRGMLPKGRLGR LFT LKVYKG +HPH
Sbjct: 155 YRRHSGRPGGMKEETFDQLQKRIPERIIEHAVRGMLPKGRLGRRLFTHLKVYKGAEHPHE 214
Query: 335 AQKPVDLPIRDKRIE 291
AQKPV LPI+DKRI+
Sbjct: 215 AQKPVPLPIKDKRIQ 229
>sp|P12629|RK13_SPIOL 50S RIBOSOMAL PROTEIN L13, CHLOROPLAST PRECURSOR (CL13)
gi|81483|pir||A32033 ribosomal protein L13 precursor,
chloroplast - spinach gi|170133|gb|AAA34040.1| ribosomal
protein L13
Length = 250
Score = 133 bits (334), Expect = 1e-30
Identities = 61/78 (78%), Positives = 69/78 (88%)
Frame = -3
Query: 515 YRRHSGRPGGMKVETFSQLQNRIPERIIEHAVRGMLPKGRLGRDLFTPLKVYKGPDHPHA 336
YRRHSGRPGG+K ETF QLQ RIPERIIEHAVRGMLPKGRLGR LF LKVYKG +HPH
Sbjct: 173 YRRHSGRPGGLKEETFDQLQKRIPERIIEHAVRGMLPKGRLGRYLFNHLKVYKGAEHPHQ 232
Query: 335 AQKPVDLPIRDKRIELKR 282
AQ+P+DLP+RDKRI +++
Sbjct: 233 AQQPIDLPLRDKRIRVEK 250
>ref|NP_680899.1| 50S ribosomal protein L13 [Thermosynechococcus elongatus BP-1]
gi|22293829|dbj|BAC07661.1| 50S ribosomal protein L13
[Thermosynechococcus elongatus BP-1]
Length = 152
Score = 117 bits (292), Expect = 1e-25
Identities = 55/69 (79%), Positives = 58/69 (83%)
Frame = -3
Query: 515 YRRHSGRPGGMKVETFSQLQNRIPERIIEHAVRGMLPKGRLGRDLFTPLKVYKGPDHPHA 336
YRRHSGRPGGMK+ETF QLQ RIPERIIEHAV+GMLPK LGR LFT LKVY GP+HPH
Sbjct: 78 YRRHSGRPGGMKIETFDQLQARIPERIIEHAVKGMLPKNSLGRKLFTKLKVYAGPEHPHQ 137
Query: 335 AQKPVDLPI 309
AQKP L I
Sbjct: 138 AQKPQPLTI 146
>ref|NP_488228.1| 50S ribosomal protein L13 [Nostoc sp. PCC 7120]
gi|25295186|pir||AE2329 50S ribosomal protein L13
[imported] - Nostoc sp. (strain PCC 7120)
gi|17133323|dbj|BAB75887.1| 50S ribosomal protein L13
[Nostoc sp. PCC 7120]
Length = 151
Score = 112 bits (281), Expect = 2e-24
Identities = 51/69 (73%), Positives = 58/69 (83%)
Frame = -3
Query: 515 YRRHSGRPGGMKVETFSQLQNRIPERIIEHAVRGMLPKGRLGRDLFTPLKVYKGPDHPHA 336
YRRHSGRPGGMK ETF++LQ R+PERI+EHAV+GMLPK LG+ LFT LKVY GP HPH
Sbjct: 75 YRRHSGRPGGMKTETFAKLQQRLPERIVEHAVKGMLPKNSLGKQLFTKLKVYAGPTHPHD 134
Query: 335 AQKPVDLPI 309
AQKP +L I
Sbjct: 135 AQKPKELNI 143
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 459,090,068
Number of Sequences: 1393205
Number of extensions: 9786766
Number of successful extensions: 24361
Number of sequences better than 10.0: 195
Number of HSP's better than 10.0 without gapping: 23771
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24336
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 16154357632
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
