Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC012436A_C01 KMC012436A_c01
(625 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_566585.1| cyclic nucleotide-binding transporter 1 (CNBT1)... 137 2e-43
gb|AAF73129.1|AF148542_1 cyclic nucleotide-binding transporter 2... 129 7e-42
ref|NP_188396.1| cyclic nucleotide-binding transporter 2 (CNBT2)... 121 2e-39
pir||H86330 probable cyclic nucleotide and calmodulin-regulated ... 74 2e-15
ref|NP_173408.1| cyclic nucleotide-regulated ion channel, putati... 74 2e-15
>ref|NP_566585.1| cyclic nucleotide-binding transporter 1 (CNBT1); protein id:
At3g17700.1, supported by cDNA: gi_8131897 [Arabidopsis
thaliana] gi|8131898|gb|AAF73128.1|AF148541_1 cyclic
nucleotide-binding transporter 1 [Arabidopsis thaliana]
gi|8131901|gb|AAF73130.1|AF148542_2 cyclic
nucleotide-binding transporter 1 [Arabidopsis thaliana]
gi|9294160|dbj|BAB02062.1| contains similarity to cyclic
nucleotide and calmodulin-regulated ion channel
protein-like~gene_id:MKP6.28 [Arabidopsis thaliana]
Length = 764
Score = 137 bits (344), Expect(2) = 2e-43
Identities = 63/98 (64%), Positives = 83/98 (84%)
Frame = -2
Query: 624 ILSQGSLIEKMVFVVRGKLESIGEDGTRMPLSEGDACGEELMTWYLEHSSVSSDGRKVRL 445
+L +G L+EKMVF+VRG++ESIGEDG+ +PL EGD CGEEL+TW LE SSV+ DG ++R+
Sbjct: 620 VLHRGGLVEKMVFIVRGEMESIGEDGSVLPLYEGDVCGEELLTWCLERSSVNPDGTRIRM 679
Query: 444 PGQRLVSNRTVKCLTNVEAFSLSAADLEEVTILFTRLL 331
P + L+S+R V+C+TNVEAFSLS ADLE+VT LF+R L
Sbjct: 680 PSKGLLSSRNVRCVTNVEAFSLSVADLEDVTSLFSRFL 717
Score = 60.8 bits (146), Expect(2) = 2e-43
Identities = 27/40 (67%), Positives = 33/40 (82%)
Frame = -3
Query: 335 FLRRPQVQGALRYESPYWRSLAANRIQVAWRYRQTRLSRV 216
FLR +VQGA+RY+SPYWR AA +IQVAWRYR+ RL R+
Sbjct: 716 FLRSHRVQGAIRYDSPYWRLRAARQIQVAWRYRRRRLHRL 755
>gb|AAF73129.1|AF148542_1 cyclic nucleotide-binding transporter 2 [Arabidopsis thaliana]
gi|9294159|dbj|BAB02061.1| cyclic nucleotide and
calmodulin-regulated ion channel protein-like
[Arabidopsis thaliana]
Length = 729
Score = 129 bits (325), Expect(2) = 7e-42
Identities = 62/98 (63%), Positives = 81/98 (82%)
Frame = -2
Query: 624 ILSQGSLIEKMVFVVRGKLESIGEDGTRMPLSEGDACGEELMTWYLEHSSVSSDGRKVRL 445
+L L+EKMVF+VRG++ESIGEDG+ +PLSEGD CGEEL+TW L SS++ DG ++++
Sbjct: 587 VLHHRGLVEKMVFIVRGEMESIGEDGSVLPLSEGDVCGEELLTWCL--SSINPDGTRIKM 644
Query: 444 PGQRLVSNRTVKCLTNVEAFSLSAADLEEVTILFTRLL 331
P + LVSNR V+C+TNVEAFSLS ADLE+VT LF+R L
Sbjct: 645 PPKGLVSNRNVRCVTNVEAFSLSVADLEDVTSLFSRFL 682
Score = 63.2 bits (152), Expect(2) = 7e-42
Identities = 28/43 (65%), Positives = 36/43 (83%)
Frame = -3
Query: 335 FLRRPQVQGALRYESPYWRSLAANRIQVAWRYRQTRLSRVNSS 207
FLR +VQGA+RYESPYWR AA +IQVAWRYR+ +L R+N++
Sbjct: 681 FLRSHRVQGAIRYESPYWRLRAAMQIQVAWRYRKRQLQRLNTA 723
>ref|NP_188396.1| cyclic nucleotide-binding transporter 2 (CNBT2); protein id:
At3g17690.1 [Arabidopsis thaliana]
Length = 743
Score = 121 bits (304), Expect(2) = 2e-39
Identities = 61/110 (55%), Positives = 80/110 (72%), Gaps = 12/110 (10%)
Frame = -2
Query: 624 ILSQGSLIEKMVFVVRGKLESIGEDGTRMPLSEGDACGEELMTWYL------------EH 481
+L L+EKMVF+VRG++ESIGEDG+ +PLSEGD CGEEL+TW L E+
Sbjct: 587 VLHHRGLVEKMVFIVRGEMESIGEDGSVLPLSEGDVCGEELLTWCLSSINPETWNFGAEY 646
Query: 480 SSVSSDGRKVRLPGQRLVSNRTVKCLTNVEAFSLSAADLEEVTILFTRLL 331
+DG ++++P + LVSNR V+C+TNVEAFSLS ADLE+VT LF+R L
Sbjct: 647 VLKLADGTRIKMPPKGLVSNRNVRCVTNVEAFSLSVADLEDVTSLFSRFL 696
Score = 63.2 bits (152), Expect(2) = 2e-39
Identities = 28/43 (65%), Positives = 36/43 (83%)
Frame = -3
Query: 335 FLRRPQVQGALRYESPYWRSLAANRIQVAWRYRQTRLSRVNSS 207
FLR +VQGA+RYESPYWR AA +IQVAWRYR+ +L R+N++
Sbjct: 695 FLRSHRVQGAIRYESPYWRLRAAMQIQVAWRYRKRQLQRLNTA 737
>pir||H86330 probable cyclic nucleotide and calmodulin-regulated ion channel -
Arabidopsis thaliana
gi|10086501|gb|AAG12561.1|AC007797_21 Putative cyclic
nucleotide and calmodulin-regulated ion channel
[Arabidopsis thaliana]
Length = 746
Score = 73.6 bits (179), Expect(2) = 2e-15
Identities = 45/103 (43%), Positives = 61/103 (58%), Gaps = 6/103 (5%)
Frame = -2
Query: 624 ILSQGSLIEKMVFVVRGKLESIGEDGTRMP------LSEGDACGEELMTWYLEHSSVSSD 463
I+ +G + +M+F++RG+LES+ DG R L EGD CGEEL+TW L+ + S+
Sbjct: 528 IVREGDPVNEMLFIIRGRLESVTTDGGRSGFFNRGLLKEGDFCGEELLTWALDPKAGSN- 586
Query: 462 GRKVRLPGQRLVSNRTVKCLTNVEAFSLSAADLEEVTILFTRL 334
LP S RTVK LT VEAF+L A +L+ V F RL
Sbjct: 587 -----LPS----STRTVKALTEVEAFALEAEELKFVASQFRRL 620
Score = 30.4 bits (67), Expect(2) = 2e-15
Identities = 15/30 (50%), Positives = 17/30 (56%)
Frame = -3
Query: 332 LRRPQVQGALRYESPYWRSLAANRIQVAWR 243
L QVQ R+ S WR+ AA IQ AWR
Sbjct: 620 LHSRQVQQTFRFYSQQWRTWAACFIQAAWR 649
>ref|NP_173408.1| cyclic nucleotide-regulated ion channel, putative; protein id:
At1g19780.1 [Arabidopsis thaliana]
Length = 728
Score = 73.6 bits (179), Expect(2) = 2e-15
Identities = 45/103 (43%), Positives = 61/103 (58%), Gaps = 6/103 (5%)
Frame = -2
Query: 624 ILSQGSLIEKMVFVVRGKLESIGEDGTRMP------LSEGDACGEELMTWYLEHSSVSSD 463
I+ +G + +M+F++RG+LES+ DG R L EGD CGEEL+TW L+ + S+
Sbjct: 510 IVREGDPVNEMLFIIRGRLESVTTDGGRSGFFNRGLLKEGDFCGEELLTWALDPKAGSN- 568
Query: 462 GRKVRLPGQRLVSNRTVKCLTNVEAFSLSAADLEEVTILFTRL 334
LP S RTVK LT VEAF+L A +L+ V F RL
Sbjct: 569 -----LPS----STRTVKALTEVEAFALEAEELKFVASQFRRL 602
Score = 30.4 bits (67), Expect(2) = 2e-15
Identities = 15/30 (50%), Positives = 17/30 (56%)
Frame = -3
Query: 332 LRRPQVQGALRYESPYWRSLAANRIQVAWR 243
L QVQ R+ S WR+ AA IQ AWR
Sbjct: 602 LHSRQVQQTFRFYSQQWRTWAACFIQAAWR 631
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 521,836,934
Number of Sequences: 1393205
Number of extensions: 10594745
Number of successful extensions: 27312
Number of sequences better than 10.0: 58
Number of HSP's better than 10.0 without gapping: 26404
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27242
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 25301904073
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
