Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC012435A_C01 KMC012435A_c01
(561 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB33419.1| putative senescence-associated protein [Pisum sa... 179 2e-44
ref|NP_194304.1| putative ribosomal protein S10; protein id: At4... 122 3e-27
sp|Q9AYP4|RS10_ORYSA 40S ribosomal protein S10 gi|12246885|dbj|B... 121 5e-27
emb|CAD41005.1| OSJNBa0042L16.3 [Oryza sativa (japonica cultivar... 121 5e-27
ref|NP_198967.1| putative protein; protein id: At5g41520.1, supp... 116 2e-25
>dbj|BAB33419.1| putative senescence-associated protein [Pisum sativum]
Length = 288
Score = 179 bits (455), Expect = 2e-44
Identities = 94/129 (72%), Positives = 99/129 (75%), Gaps = 5/129 (3%)
Frame = +2
Query: 188 INN*ILKFKRKNVSRMKELLEGGTTIDSMDSQNCKN*SINHYISGALELVGAPKPPEPRP 367
+NN LK +R + L EGG TI S DSQNCKN NH I + ELVGAPKPPEPRP
Sbjct: 1 MNNYKLKCQRDYTT----LREGGNTIGSKDSQNCKNWIRNHNIYASFELVGAPKPPEPRP 56
Query: 368 KPGLPPGPPKDGL*SAGAPPLS-PNSPP----RGPPRYPSRSPPNLLSPSKRGGPLGRSP 532
KPGLPPGPPK+GL SAGAPPLS PNSPP GPPRYPSRSPPNLLSPS RGGPLGRSP
Sbjct: 57 KPGLPPGPPKEGLWSAGAPPLSPPNSPPGPLGPGPPRYPSRSPPNLLSPSNRGGPLGRSP 116
Query: 533 AGPPNGLPA 559
GPPNGLPA
Sbjct: 117 GGPPNGLPA 125
>ref|NP_194304.1| putative ribosomal protein S10; protein id: At4g25740.1, supported
by cDNA: gi_14334535, supported by cDNA: gi_21281206
[Arabidopsis thaliana] gi|20139845|sp|Q9SW09|R101_ARATH
40S ribosomal protein S10-1 gi|7440314|pir||T04228
ribosomal protein S10, cytosolic - Arabidopsis thaliana
gi|4539292|emb|CAB39595.1| putative ribosomal protein
S10 [Arabidopsis thaliana] gi|7269424|emb|CAB81384.1|
putative ribosomal protein S10 [Arabidopsis thaliana]
gi|14334536|gb|AAK59676.1| putative ribosomal protein
S10 [Arabidopsis thaliana] gi|21281207|gb|AAM44974.1|
putative ribosomal protein S10 [Arabidopsis thaliana]
Length = 177
Score = 122 bits (306), Expect = 3e-27
Identities = 57/83 (68%), Positives = 66/83 (78%), Gaps = 2/83 (2%)
Frame = -1
Query: 561 PAGRPFGGPAGDRPRGPPRFEGERRFGGDRDGYRGGPRGGEFGDKGGAPADYRPSFGGPG 382
P GRPFGGP GDR RGPPR +G+R GDRDGYRGGPRGG+ +KGGAPAD++PSF G G
Sbjct: 97 PGGRPFGGPPGDRQRGPPRSDGDRPRFGDRDGYRGGPRGGD--EKGGAPADFQPSFQGGG 154
Query: 381 GRPGFGRGSGGF--GAPTSSNAP 319
GRPGFGRG+GG+ AP+ S P
Sbjct: 155 GRPGFGRGAGGYSAAAPSGSGFP 177
>sp|Q9AYP4|RS10_ORYSA 40S ribosomal protein S10 gi|12246885|dbj|BAB21002.1| ribosomal
protein S10 [Oryza sativa (japonica cultivar-group)]
Length = 183
Score = 121 bits (304), Expect = 5e-27
Identities = 63/85 (74%), Positives = 70/85 (82%), Gaps = 6/85 (7%)
Frame = -1
Query: 561 PAGRPFG-GPAGDRPRGPPRFEGERRFGGDRDGYRGGPRG--GEF-GDKGGAPADYRPSF 394
P GRPFG GP GDRPRGPPRFEG+R GDRDGYRGGPRG G+F G+KGGAPA+++PSF
Sbjct: 97 PPGRPFGSGPPGDRPRGPPRFEGDRPRFGDRDGYRGGPRGAPGDFGGEKGGAPAEFQPSF 156
Query: 393 GGPGGRPGFGR-GSGGFGA-PTSSN 325
GGRPGFGR G GGFGA PTSS+
Sbjct: 157 RSSGGRPGFGRGGGGGFGAGPTSSS 181
Score = 32.0 bits (71), Expect = 5.4
Identities = 25/71 (35%), Positives = 27/71 (37%), Gaps = 2/71 (2%)
Frame = +2
Query: 353 PEPRPKPGLPPGPPKDGL*SAGAPPLSPNSPPRGPPRYPSRSPPNLLSPSKRGGPLGRSP 532
P K PPG P G+ P P PRGPPR+ P RGGP G
Sbjct: 88 PATLKKSARPPGRP------FGSGP--PGDRPRGPPRFEGDRPRFGDRDGYRGGPRGAPG 139
Query: 533 --AGPPNGLPA 559
G G PA
Sbjct: 140 DFGGEKGGAPA 150
>emb|CAD41005.1| OSJNBa0042L16.3 [Oryza sativa (japonica cultivar-group)]
Length = 183
Score = 121 bits (304), Expect = 5e-27
Identities = 63/85 (74%), Positives = 70/85 (82%), Gaps = 6/85 (7%)
Frame = -1
Query: 561 PAGRPFG-GPAGDRPRGPPRFEGERRFGGDRDGYRGGPRG--GEF-GDKGGAPADYRPSF 394
P GRPFG GP GDRPRGPPRFEG+R GDRDGYRGGPRG G+F G+KGGAPA+++PSF
Sbjct: 97 PPGRPFGSGPPGDRPRGPPRFEGDRPRFGDRDGYRGGPRGAPGDFGGEKGGAPAEFQPSF 156
Query: 393 GGPGGRPGFGR-GSGGFGA-PTSSN 325
GGRPGFGR G GGFGA PTSS+
Sbjct: 157 RSSGGRPGFGRGGGGGFGAGPTSSS 181
Score = 32.3 bits (72), Expect = 4.1
Identities = 28/88 (31%), Positives = 35/88 (38%), Gaps = 2/88 (2%)
Frame = +2
Query: 302 INHYISGALELVGAPKPPEPRPKPGLPPGPPKDGL*SAGAPPLSPNSPPRGPPRYPSRSP 481
+ +Y++ E+V P K PPG P G+ P P PRGPPR+ P
Sbjct: 76 LRNYLNLPSEIV-----PATLKKSARPPGRP------FGSGP--PGDRPRGPPRFEGDRP 122
Query: 482 PNLLSPSKRGGPLGRSP--AGPPNGLPA 559
RGGP G G G PA
Sbjct: 123 RFGDRDGYRGGPRGAPGDFGGEKGGAPA 150
>ref|NP_198967.1| putative protein; protein id: At5g41520.1, supported by cDNA:
gi_14030698, supported by cDNA: gi_14335121, supported
by cDNA: gi_16974520 [Arabidopsis thaliana]
gi|20139725|sp|Q9FFS8|R102_ARATH 40S ribosomal protein
S10-2 gi|10178006|dbj|BAB11458.1| contains similarity to
40S ribosomal protein S10~gene_id:MBK23.4 [Arabidopsis
thaliana] gi|14030699|gb|AAK53024.1|AF375440_1
AT5g41520/MBK23_4 [Arabidopsis thaliana]
gi|14335122|gb|AAK59840.1| AT5g41520/MBK23_4
[Arabidopsis thaliana] gi|16974521|gb|AAL31170.1|
AT5g41520/MBK23_4 [Arabidopsis thaliana]
Length = 180
Score = 116 bits (290), Expect = 2e-25
Identities = 59/76 (77%), Positives = 64/76 (83%), Gaps = 3/76 (3%)
Frame = -1
Query: 561 PAGRPFGGPAGDRPRGPPRFEGERRFGGDRDGYRGGPR-GGEFGDKGGAPADYRPSF-GG 388
P GRPFGG GDRPRGPPR +GERRFG DRDGYRGGP+ GGE+GDK GAPADY+P F GG
Sbjct: 98 PLGRPFGG-GGDRPRGPPRGDGERRFG-DRDGYRGGPKSGGEYGDKAGAPADYQPGFRGG 155
Query: 387 PGG-RPGFGRGSGGFG 343
GG R GFGRG+GGFG
Sbjct: 156 AGGARQGFGRGAGGFG 171
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 523,673,566
Number of Sequences: 1393205
Number of extensions: 14516241
Number of successful extensions: 200899
Number of sequences better than 10.0: 6510
Number of HSP's better than 10.0 without gapping: 77839
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145241
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20095422690
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
