Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC012434A_C02 KMC012434A_c02
(573 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_565767.1| expressed protein; protein id: At2g33560.1, sup... 102 3e-21
gb|AAM65748.1| unknown [Arabidopsis thaliana] 100 1e-20
pir||A84747 hypothetical protein At2g33560 [imported] - Arabidop... 70 2e-11
ref|NP_037659.1|ND5_15261 NADH dehydrogenase subunit 5 [Talpa eu... 34 1.1
ref|XP_227618.1| similar to CDC14 homolog A, isoform 1; S. cerev... 33 3.3
>ref|NP_565767.1| expressed protein; protein id: At2g33560.1, supported by cDNA:
42992. [Arabidopsis thaliana] gi|20196848|gb|AAB80673.2|
expressed protein [Arabidopsis thaliana]
Length = 395
Score = 102 bits (255), Expect = 3e-21
Identities = 62/138 (44%), Positives = 86/138 (61%), Gaps = 10/138 (7%)
Frame = -3
Query: 568 NRTRGTSLSIYKDSAATGETYSQ-QSDISQP----WHTLGARAERNKENNAIPGKWKSFK 404
N++ T +IY D+ + + +Q +SD S+P W LG RAERNKENN++P KW SFK
Sbjct: 258 NQSSKTPFAIYADAVSDTTSGNQPESDKSRPEFGSWLMLGGRAERNKENNSLPRKWASFK 317
Query: 403 IPQRPGTIS-GAATASAIPVFID-EECQDSQSMKA---EGCKSSSLKIRQEDDKDLKSET 239
+PQ+P + AA+AS VF+D EEC + + K E SSS + +++K ET
Sbjct: 318 VPQKPIVRTVAAASASTFEVFVDEEECTEEEEEKKKNDETISSSSNVLPLNGGREIKKET 377
Query: 238 ELLRKNPLRNFPKNSLPR 185
ELLR+NPLR+FP NS R
Sbjct: 378 ELLRQNPLRHFPPNSFLR 395
>gb|AAM65748.1| unknown [Arabidopsis thaliana]
Length = 395
Score = 100 bits (249), Expect = 1e-20
Identities = 61/138 (44%), Positives = 85/138 (61%), Gaps = 10/138 (7%)
Frame = -3
Query: 568 NRTRGTSLSIYKDSAATGETYSQ-QSDISQP----WHTLGARAERNKENNAIPGKWKSFK 404
N++ T +IY D+ + + +Q +SD S+P W LG RAERNKENN++P KW SFK
Sbjct: 258 NQSSKTPFAIYADAVSDTTSGNQPESDKSRPEFGSWLMLGGRAERNKENNSLPRKWASFK 317
Query: 403 IPQRPGTIS-GAATASAIPVFID-EECQDSQSMKA---EGCKSSSLKIRQEDDKDLKSET 239
+PQ+P + AA+A VF+D EEC + + K E SSS + +++K ET
Sbjct: 318 VPQKPIVRTVAAASAFTFEVFVDEEECTEEEEEKKKNDETISSSSNVLPLNGGREIKKET 377
Query: 238 ELLRKNPLRNFPKNSLPR 185
ELLR+NPLR+FP NS R
Sbjct: 378 ELLRQNPLRHFPPNSFLR 395
>pir||A84747 hypothetical protein At2g33560 [imported] - Arabidopsis thaliana
Length = 272
Score = 70.1 bits (170), Expect = 2e-11
Identities = 39/80 (48%), Positives = 53/80 (65%), Gaps = 6/80 (7%)
Frame = -3
Query: 553 TSLSIYKDSAATGETYSQ-QSDISQP----WHTLGARAERNKENNAIPGKWKSFKIPQRP 389
T +IY D+ + + +Q +SD S+P W LG RAERNKENN++P KW SFK+PQ+P
Sbjct: 189 TPFAIYADAVSDTTSGNQPESDKSRPEFGSWLMLGGRAERNKENNSLPRKWASFKVPQKP 248
Query: 388 GTIS-GAATASAIPVFIDEE 332
+ AA+AS VF+DEE
Sbjct: 249 IVRTVAAASASTFEVFVDEE 268
>ref|NP_037659.1|ND5_15261 NADH dehydrogenase subunit 5 [Talpa europaea]
gi|6851076|emb|CAB71169.1| NADH dehydrogenase subunit 5
[Talpa europaea]
Length = 606
Score = 34.3 bits (77), Expect = 1.1
Identities = 20/56 (35%), Positives = 30/56 (52%), Gaps = 3/56 (5%)
Frame = -1
Query: 480 LGTHLELELKEIRKIMQFPANGNPSRFHSDLGLYPEL---LLLVLSLCLLMKSVKI 322
LG L LEL + + ++FP N +F + LG +P + LL +SL L KS +
Sbjct: 496 LGFVLALELNTMTQYLKFPHTSNSHKFSNQLGFFPIIVHRLLPTMSLVLSQKSASM 551
>ref|XP_227618.1| similar to CDC14 homolog A, isoform 1; S. cerevisiae CDC14 homolog,
gene A; CDC14 (cell division cycle 14, S. cerevisiae)
homolog A [Homo sapiens] [Rattus norvegicus]
Length = 769
Score = 32.7 bits (73), Expect = 3.3
Identities = 27/84 (32%), Positives = 33/84 (39%)
Frame = -3
Query: 556 GTSLSIYKDSAATGETYSQQSDISQPWHTLGARAERNKENNAIPGKWKSFKIPQRPGTIS 377
G S+S K + G TY QS I R E N +PGK+ +F P I
Sbjct: 214 GASISGNK-AMVWGRTYRFQSKIVL---LTAIRVENGDFNWIVPGKFLAFSGPHPKSKIE 269
Query: 376 GAATASAIPVFIDEECQDSQSMKA 305
TASA PV D + A
Sbjct: 270 NGITASAPPVLADRRANAGYPLHA 293
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 457,165,279
Number of Sequences: 1393205
Number of extensions: 9344040
Number of successful extensions: 27140
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 26379
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27122
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 21243732558
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
