Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC012427A_C01 KMC012427A_c01
(589 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_200761.1| 1-aminocyclopropane-1-carboxylate oxidase - lik... 148 4e-35
ref|NP_200762.1| 1-aminocyclopropane-1-carboxylate oxidase - lik... 146 2e-34
gb|AAD38147.1|AF139500_1 unknown [Prunus armeniaca] 145 3e-34
gb|AAC49826.1| desacetoxyvindoline 4-hydroxylase [Catharanthus r... 145 5e-34
sp|O04847|DV4H_CATRO Desacetoxyvindoline 4-hydroxylase gi|743324... 145 5e-34
>ref|NP_200761.1| 1-aminocyclopropane-1-carboxylate oxidase - like protein; protein
id: At5g59530.1 [Arabidopsis thaliana]
gi|8885557|dbj|BAA97487.1| leucoanthocyanidin
dioxygenase-like protein [Arabidopsis thaliana]
Length = 364
Score = 148 bits (374), Expect = 4e-35
Identities = 72/125 (57%), Positives = 93/125 (73%)
Frame = -2
Query: 585 FFTIVLQDQQGGLQALHADQWINVPAVHGTLVVNMGDLLQLITNDKFLSVYHRILASHGG 406
F T++LQD GGLQ LH D W++V + G LVVN+GD LQLITNDKF+SV HR+LA+ G
Sbjct: 242 FLTVLLQDNIGGLQILHQDSWVDVSPLPGALVVNVGDFLQLITNDKFISVEHRVLANTRG 301
Query: 405 PRVSIASFFVNPVQEEGKPKVYGPIKELLSEINPPVYRETTISEFLAHHFVKGLDGNSAL 226
PR+S+ASFF + ++E VYGP+KEL+SE NPP YR+TT+ E+ +F KGLDG S L
Sbjct: 302 PRISVASFFSSSIRENS--TVYGPMKELVSEENPPKYRDTTLREYSEGYFKKGLDGTSHL 359
Query: 225 KPFRL 211
FR+
Sbjct: 360 SNFRI 364
>ref|NP_200762.1| 1-aminocyclopropane-1-carboxylate oxidase - like protein; protein
id: At5g59540.1, supported by cDNA: gi_15983482
[Arabidopsis thaliana] gi|8885558|dbj|BAA97488.1|
leucoanthocyanidin dioxygenase-like protein [Arabidopsis
thaliana] gi|15983483|gb|AAL11609.1|AF424616_1
AT5g59540/f2o15_200 [Arabidopsis thaliana]
Length = 366
Score = 146 bits (368), Expect = 2e-34
Identities = 71/125 (56%), Positives = 91/125 (72%)
Frame = -2
Query: 585 FFTIVLQDQQGGLQALHADQWINVPAVHGTLVVNMGDLLQLITNDKFLSVYHRILASHGG 406
F T++LQD GGLQ LH D W++V +HG LVVN+GD LQLITNDKF+SV HR+LA+ G
Sbjct: 244 FLTLLLQDNIGGLQILHQDSWVDVSPIHGALVVNIGDFLQLITNDKFVSVEHRVLANRQG 303
Query: 405 PRVSIASFFVNPVQEEGKPKVYGPIKELLSEINPPVYRETTISEFLAHHFVKGLDGNSAL 226
PR+S+ASFF + ++ +VYGP+KEL+SE NPP YR+ TI E+ F KGLDG S L
Sbjct: 304 PRISVASFFSSSMRPNS--RVYGPMKELVSEENPPKYRDITIKEYSKIFFEKGLDGTSHL 361
Query: 225 KPFRL 211
R+
Sbjct: 362 SNIRI 366
>gb|AAD38147.1|AF139500_1 unknown [Prunus armeniaca]
Length = 370
Score = 145 bits (367), Expect = 3e-34
Identities = 74/126 (58%), Positives = 91/126 (71%)
Frame = -2
Query: 588 DFFTIVLQDQQGGLQALHADQWINVPAVHGTLVVNMGDLLQLITNDKFLSVYHRILASHG 409
DF T++LQD GGLQ LH + WI+V V G LVVN+GDLLQLI+ND+F SV HR+LA+
Sbjct: 247 DFITVLLQDHIGGLQVLHQNTWIDVLPVPGALVVNIGDLLQLISNDRFRSVEHRVLANRA 306
Query: 408 GPRVSIASFFVNPVQEEGKPKVYGPIKELLSEINPPVYRETTISEFLAHHFVKGLDGNSA 229
PRVS+A FF P++YGPIKELLSE N P YRETT+ ++ AHH+ KGLDG A
Sbjct: 307 CPRVSVACFFSTGFL--ALPRIYGPIKELLSEDNLPKYRETTVKDYNAHHYNKGLDGTCA 364
Query: 228 LKPFRL 211
L F+L
Sbjct: 365 LTHFKL 370
>gb|AAC49826.1| desacetoxyvindoline 4-hydroxylase [Catharanthus roseus]
Length = 386
Score = 145 bits (365), Expect = 5e-34
Identities = 71/127 (55%), Positives = 95/127 (73%), Gaps = 2/127 (1%)
Frame = -2
Query: 585 FFTIVLQDQQGGLQALHADQWINVPAVHGTLVVNMGDLLQLITNDKFLSVYHRILASHGG 406
F TI++QDQ GGLQ L +QWI+VP + G LV+N+ DLLQLITNDKF SV HR+LA+ G
Sbjct: 258 FLTILMQDQIGGLQILLENQWIDVPFIPGALVINIADLLQLITNDKFKSVEHRVLANKVG 317
Query: 405 PRVSIA-SFFVNPVQEEG-KPKVYGPIKELLSEINPPVYRETTISEFLAHHFVKGLDGNS 232
PR+S+A +F + +EG P++YGPIKEL+SE NPP+Y+E T+ +F+ F K D +S
Sbjct: 318 PRISVAVAFGIKTQTQEGVSPRLYGPIKELISEENPPIYKEVTVKDFITIRFAKRFDDSS 377
Query: 231 ALKPFRL 211
+L PFRL
Sbjct: 378 SLSPFRL 384
>sp|O04847|DV4H_CATRO Desacetoxyvindoline 4-hydroxylase gi|7433242|pir||T07914 probable
desacetoxyvindoline-4-hydroxylase (EC 1.14.11.-) -
Madagascar periwinkle gi|2352812|gb|AAB97311.1|
desacetoxyvindoline-4-hydroxylase [Catharanthus roseus]
Length = 401
Score = 145 bits (365), Expect = 5e-34
Identities = 71/127 (55%), Positives = 95/127 (73%), Gaps = 2/127 (1%)
Frame = -2
Query: 585 FFTIVLQDQQGGLQALHADQWINVPAVHGTLVVNMGDLLQLITNDKFLSVYHRILASHGG 406
F TI++QDQ GGLQ L +QWI+VP + G LV+N+ DLLQLITNDKF SV HR+LA+ G
Sbjct: 273 FLTILMQDQIGGLQILLENQWIDVPFIPGALVINIADLLQLITNDKFKSVEHRVLANKVG 332
Query: 405 PRVSIA-SFFVNPVQEEG-KPKVYGPIKELLSEINPPVYRETTISEFLAHHFVKGLDGNS 232
PR+S+A +F + +EG P++YGPIKEL+SE NPP+Y+E T+ +F+ F K D +S
Sbjct: 333 PRISVAVAFGIKTQTQEGVSPRLYGPIKELISEENPPIYKEVTVKDFITIRFAKRFDDSS 392
Query: 231 ALKPFRL 211
+L PFRL
Sbjct: 393 SLSPFRL 399
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 516,528,185
Number of Sequences: 1393205
Number of extensions: 11105175
Number of successful extensions: 21207
Number of sequences better than 10.0: 620
Number of HSP's better than 10.0 without gapping: 20502
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21012
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 22283372436
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
