Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC012409A_C01 KMC012409A_c01
(555 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|P46466|PRS4_ORYSA 26S PROTEASE REGULATORY SUBUNIT 4 HOMOLOG (... 229 2e-59
dbj|BAB78491.1| 26S proteasome regulatory particle triple-A ATPa... 229 2e-59
gb|AAL73395.1|AF432345_1 26S proteasome regulatory subunit IV [T... 226 1e-58
gb|AAK50114.1|AF372977_1 At2g20140/T2G17.6 [Arabidopsis thaliana] 226 1e-58
gb|AAM65126.1| 26S proteasome subunit 4 [Arabidopsis thaliana] 226 1e-58
>sp|P46466|PRS4_ORYSA 26S PROTEASE REGULATORY SUBUNIT 4 HOMOLOG (TAT-BINDING PROTEIN
HOMOLOG 2) gi|7435744|pir||T03776 tat binding protein
homolog - rice gi|556558|dbj|BAA04615.1| rice homologue
of Tat binding protein [Oryza sativa (japonica
cultivar-group)]
Length = 448
Score = 229 bits (584), Expect = 2e-59
Identities = 115/119 (96%), Positives = 118/119 (98%)
Frame = -3
Query: 553 RGDVKVILATHSIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLE 374
RGDVKVILAT+ IESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTS+MTLADDVNLE
Sbjct: 330 RGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSKMTLADDVNLE 389
Query: 373 EFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHADFKKAKDKVMFKKKEGVPEGLYM 197
EFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHADFKKAK+KVMFKKKEGVPEGLYM
Sbjct: 390 EFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHADFKKAKEKVMFKKKEGVPEGLYM 448
>dbj|BAB78491.1| 26S proteasome regulatory particle triple-A ATPase subunit2b [Oryza
sativa (japonica cultivar-group)]
Length = 450
Score = 229 bits (584), Expect = 2e-59
Identities = 115/119 (96%), Positives = 118/119 (98%)
Frame = -3
Query: 553 RGDVKVILATHSIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLE 374
RGDVKVILAT+ IESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTS+MTLADDVNLE
Sbjct: 332 RGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSKMTLADDVNLE 391
Query: 373 EFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHADFKKAKDKVMFKKKEGVPEGLYM 197
EFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHADFKKAK+KVMFKKKEGVPEGLYM
Sbjct: 392 EFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHADFKKAKEKVMFKKKEGVPEGLYM 450
>gb|AAL73395.1|AF432345_1 26S proteasome regulatory subunit IV [Tortula ruralis]
Length = 446
Score = 226 bits (577), Expect = 1e-58
Identities = 113/119 (94%), Positives = 117/119 (97%)
Frame = -3
Query: 553 RGDVKVILATHSIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLE 374
RGDVKVILAT+ IESLDPALLRPGRIDRKIEFPLPD KTRRRIFQIHTSRMT+ADDVNLE
Sbjct: 328 RGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDTKTRRRIFQIHTSRMTMADDVNLE 387
Query: 373 EFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHADFKKAKDKVMFKKKEGVPEGLYM 197
EFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHADFKKAK+KVM+KKKEGVPEGLYM
Sbjct: 388 EFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHADFKKAKEKVMYKKKEGVPEGLYM 446
>gb|AAK50114.1|AF372977_1 At2g20140/T2G17.6 [Arabidopsis thaliana]
Length = 443
Score = 226 bits (576), Expect = 1e-58
Identities = 113/119 (94%), Positives = 117/119 (97%)
Frame = -3
Query: 553 RGDVKVILATHSIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLE 374
RGDVKVILAT+ IESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTS+MTLA+DVNLE
Sbjct: 325 RGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSKMTLAEDVNLE 384
Query: 373 EFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHADFKKAKDKVMFKKKEGVPEGLYM 197
EFVMTKDEFSGADIKAICTEAGLLALRERRMKVTH DFKKAK+KVMFKKKEGVPEGLYM
Sbjct: 385 EFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHVDFKKAKEKVMFKKKEGVPEGLYM 443
>gb|AAM65126.1| 26S proteasome subunit 4 [Arabidopsis thaliana]
Length = 443
Score = 226 bits (576), Expect = 1e-58
Identities = 113/119 (94%), Positives = 117/119 (97%)
Frame = -3
Query: 553 RGDVKVILATHSIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLE 374
RGDVKVILAT+ IESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTS+MTLA+DVNLE
Sbjct: 325 RGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSKMTLAEDVNLE 384
Query: 373 EFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHADFKKAKDKVMFKKKEGVPEGLYM 197
EFVMTKDEFSGADIKAICTEAGLLALRERRMKVTH DFKKAK+KVMFKKKEGVPEGLYM
Sbjct: 385 EFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHVDFKKAKEKVMFKKKEGVPEGLYM 443
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 480,692,235
Number of Sequences: 1393205
Number of extensions: 10322584
Number of successful extensions: 29471
Number of sequences better than 10.0: 1086
Number of HSP's better than 10.0 without gapping: 27657
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29205
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19521267756
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
