Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC012364A_C01 KMC012364A_c01
(473 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAL67875.1| unknown protein [Oryza sativa] 42 0.004
ref|NP_567185.1| F-box protein family; protein id: At4g00755.1, ... 41 0.006
gb|AAO41965.1| putative F-box protein [Arabidopsis thaliana] 41 0.006
pir||PC4365 calcium-binding protein - tapeworm (Echinococcus gra... 36 0.18
gb|AAL87849.1| calcium-binding protein [Echinococcus granulosus] 36 0.18
>gb|AAL67875.1| unknown protein [Oryza sativa]
Length = 76
Score = 41.6 bits (96), Expect = 0.004
Identities = 17/21 (80%), Positives = 20/21 (94%)
Frame = -3
Query: 471 QEMDELFYICISHVQVVGQPL 409
QEMD+L+YICISHVQ+VG PL
Sbjct: 40 QEMDDLYYICISHVQIVGIPL 60
>ref|NP_567185.1| F-box protein family; protein id: At4g00755.1, supported by cDNA:
111069. [Arabidopsis thaliana]
gi|21536774|gb|AAM61106.1| unknown [Arabidopsis
thaliana]
Length = 377
Score = 41.2 bits (95), Expect = 0.006
Identities = 20/45 (44%), Positives = 28/45 (61%)
Frame = -3
Query: 471 QEMDELFYICISHVQVVGQPLSPAFDIEIHHPSGKCTLKYFPQPD 337
QEMD +YIC+SHV+V G+ L+ +F +E +GK LK D
Sbjct: 270 QEMDGQYYICVSHVKVEGRSLAKSFRVENVDDNGKFGLKVLSYND 314
>gb|AAO41965.1| putative F-box protein [Arabidopsis thaliana]
Length = 245
Score = 41.2 bits (95), Expect = 0.006
Identities = 20/45 (44%), Positives = 28/45 (61%)
Frame = -3
Query: 471 QEMDELFYICISHVQVVGQPLSPAFDIEIHHPSGKCTLKYFPQPD 337
QEMD +YIC+SHV+V G+ L+ +F +E +GK LK D
Sbjct: 138 QEMDGQYYICVSHVKVEGRSLAKSFRVENVDDNGKFGLKVLSYND 182
>pir||PC4365 calcium-binding protein - tapeworm (Echinococcus granulosus)
(fragment) gi|499141|gb|AAC37301.1| calcium-binding
protein [Echinococcus granulosus]
Length = 338
Score = 36.2 bits (82), Expect = 0.18
Identities = 21/56 (37%), Positives = 28/56 (49%)
Frame = -3
Query: 405 PAFDIEIHHPSGKCTLKYFPQPDWCVPSTSSPTIESNNPSRLRSLMQSGVRRWEQI 238
P FD +I K P+P P+ S ES+ PS LR ++QS +RR E I
Sbjct: 278 PVFDSDIDDDEVKSVFGKAPKPKKKTPAYSDENEESSKPSVLRQVVQSVLRRMEAI 333
>gb|AAL87849.1| calcium-binding protein [Echinococcus granulosus]
Length = 303
Score = 36.2 bits (82), Expect = 0.18
Identities = 21/56 (37%), Positives = 28/56 (49%)
Frame = -3
Query: 405 PAFDIEIHHPSGKCTLKYFPQPDWCVPSTSSPTIESNNPSRLRSLMQSGVRRWEQI 238
P FD +I K P+P P+ S ES+ PS LR ++QS +RR E I
Sbjct: 243 PVFDSDIDDDEVKSVFGKAPKPKKKTPAYSDENEESSKPSVLRQVVQSVLRRMEAI 298
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 407,270,959
Number of Sequences: 1393205
Number of extensions: 8577019
Number of successful extensions: 20315
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 19693
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20311
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 12815311608
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
