Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC012358A_C01 KMC012358A_c01
(581 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_564388.1| expressed protein; protein id: At1g32080.1, sup... 204 7e-52
gb|AAM65181.1| unknown [Arabidopsis thaliana] 204 7e-52
dbj|BAB60914.1| OSJNBa0054L14.7 [Oryza sativa (japonica cultivar... 192 3e-48
gb|AAG46171.1|AC018727_23 unknown protein [Oryza sativa] 181 5e-45
gb|ZP_00081449.1| hypothetical protein [Geobacter metallireducens] 74 1e-12
>ref|NP_564388.1| expressed protein; protein id: At1g32080.1, supported by cDNA:
37302., supported by cDNA: gi_14532511, supported by
cDNA: gi_20855883 [Arabidopsis thaliana]
gi|25403144|pir||B86445 unknown protein [imported] -
Arabidopsis thaliana
gi|10801363|gb|AAG23435.1|AC084165_1 unknown protein
[Arabidopsis thaliana]
gi|12321470|gb|AAG50795.1|AC074309_12 unknown protein
[Arabidopsis thaliana] gi|14532512|gb|AAK63984.1|
At1g32080/F3C3_12 [Arabidopsis thaliana]
gi|20855884|gb|AAM26636.1| At1g32080/F3C3_12
[Arabidopsis thaliana]
Length = 512
Score = 204 bits (519), Expect = 7e-52
Identities = 104/117 (88%), Positives = 111/117 (93%)
Frame = -1
Query: 581 SLTVSILPRCITVALALSIVSLFDGANPSLTAAVVVVTGLVGANFVQATLDKLRFQDPIA 402
SLTVSILPRCITVALALSIVSLF+G N SLTAAVVVVTGL+GANFVQ LDKLR +DPIA
Sbjct: 396 SLTVSILPRCITVALALSIVSLFEGTNSSLTAAVVVVTGLIGANFVQVVLDKLRLRDPIA 455
Query: 401 RGIATASSAHGLGTAALSAKEPEALPFCAIAYALNGIFGSLLCSIPAVRQSLIAIIG 231
RGIATASSAHGLGTAALSAKEPEALPFCAIAYAL GIFGSLLCS+PAVRQSL+A++G
Sbjct: 456 RGIATASSAHGLGTAALSAKEPEALPFCAIAYALTGIFGSLLCSVPAVRQSLLAVVG 512
>gb|AAM65181.1| unknown [Arabidopsis thaliana]
Length = 512
Score = 204 bits (519), Expect = 7e-52
Identities = 104/117 (88%), Positives = 111/117 (93%)
Frame = -1
Query: 581 SLTVSILPRCITVALALSIVSLFDGANPSLTAAVVVVTGLVGANFVQATLDKLRFQDPIA 402
SLTVSILPRCITVALALSIVSLF+G N SLTAAVVVVTGL+GANFVQ LDKLR +DPIA
Sbjct: 396 SLTVSILPRCITVALALSIVSLFEGTNSSLTAAVVVVTGLIGANFVQVVLDKLRLRDPIA 455
Query: 401 RGIATASSAHGLGTAALSAKEPEALPFCAIAYALNGIFGSLLCSIPAVRQSLIAIIG 231
RGIATASSAHGLGTAALSAKEPEALPFCAIAYAL GIFGSLLCS+PAVRQSL+A++G
Sbjct: 456 RGIATASSAHGLGTAALSAKEPEALPFCAIAYALTGIFGSLLCSVPAVRQSLLAVVG 512
>dbj|BAB60914.1| OSJNBa0054L14.7 [Oryza sativa (japonica cultivar-group)]
gi|20804504|dbj|BAB92199.1| P0520B06.24 [Oryza sativa
(japonica cultivar-group)]
Length = 520
Score = 192 bits (487), Expect = 3e-48
Identities = 97/117 (82%), Positives = 105/117 (88%)
Frame = -1
Query: 581 SLTVSILPRCITVALALSIVSLFDGANPSLTAAVVVVTGLVGANFVQATLDKLRFQDPIA 402
SLT+SILPRCITVALALSIVS F+G N SLTAAVVV+TGL+GANFVQA +DKL DPIA
Sbjct: 404 SLTISILPRCITVALALSIVSFFEGVNSSLTAAVVVLTGLIGANFVQAAMDKLGLNDPIA 463
Query: 401 RGIATASSAHGLGTAALSAKEPEALPFCAIAYALNGIFGSLLCSIPAVRQSLIAIIG 231
RGI TASSAHGLGTAALSAKEPEALPFCAIAY L GIFGSL+CS+PAVRQSL+ I G
Sbjct: 464 RGIGTASSAHGLGTAALSAKEPEALPFCAIAYGLTGIFGSLICSVPAVRQSLVFIAG 520
>gb|AAG46171.1|AC018727_23 unknown protein [Oryza sativa]
Length = 458
Score = 181 bits (460), Expect = 5e-45
Identities = 89/116 (76%), Positives = 102/116 (87%)
Frame = -1
Query: 578 LTVSILPRCITVALALSIVSLFDGANPSLTAAVVVVTGLVGANFVQATLDKLRFQDPIAR 399
LT+SILPRCITVALAL +VSLF+G N S+TAAVVV+TGL+GANF QA +DKLR +DPIAR
Sbjct: 331 LTISILPRCITVALALRVVSLFEGVNTSVTAAVVVLTGLIGANFAQAVMDKLRLKDPIAR 390
Query: 398 GIATASSAHGLGTAALSAKEPEALPFCAIAYALNGIFGSLLCSIPAVRQSLIAIIG 231
GI TASSAHGLGTAA+SAKEPEALPFCAIAYAL G+ SL CS+PA+R SL+ I G
Sbjct: 391 GIGTASSAHGLGTAAVSAKEPEALPFCAIAYALTGVVASLFCSLPAIRHSLVFIAG 446
>gb|ZP_00081449.1| hypothetical protein [Geobacter metallireducens]
Length = 278
Score = 73.9 bits (180), Expect = 1e-12
Identities = 43/104 (41%), Positives = 62/104 (59%)
Frame = -1
Query: 578 LTVSILPRCITVALALSIVSLFDGANPSLTAAVVVVTGLVGANFVQATLDKLRFQDPIAR 399
+ +S+ P+ +T +A+ I G PSLTA VVV+TG+ GA L+ LR +D AR
Sbjct: 170 ILLSVAPKSVTTPIAMGISEQIGGL-PSLTAVVVVLTGITGAVGGDFILNLLRIKDDNAR 228
Query: 398 GIATASSAHGLGTAALSAKEPEALPFCAIAYALNGIFGSLLCSI 267
G+A ++HG+GTA K A F A+A ALNG+F +LL +
Sbjct: 229 GMALGVASHGIGTAHAIQKSRMAGAFSALAMALNGLFTALLLPV 272
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 510,736,536
Number of Sequences: 1393205
Number of extensions: 10896059
Number of successful extensions: 33098
Number of sequences better than 10.0: 97
Number of HSP's better than 10.0 without gapping: 32024
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33068
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 21712003912
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
