Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC012354A_C01 KMC012354A_c01
(559 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|O64981|RCA_PHAVU Ribulose bisphosphate carboxylase/oxygenase ... 259 2e-68
sp|O98997|RCA_PHAAU Ribulose bisphosphate carboxylase/oxygenase ... 259 2e-68
gb|AAG61120.1| ribulose-1,5-bisphosphate carboxylase/oxygenase a... 252 2e-66
sp|Q40281|RCA_MALDO Ribulose bisphosphate carboxylase/oxygenase ... 250 9e-66
gb|AAN18180.1| At2g39730/T5I7.3 [Arabidopsis thaliana] 234 5e-61
>sp|O64981|RCA_PHAVU Ribulose bisphosphate carboxylase/oxygenase activase, chloroplast
precursor (RuBisCO activase) (RA) gi|7438145|pir||T10815
ribulose-bisphosphate carboxylase activase (EC 6.3.4.-)
Rca1 - kidney bean gi|3033513|gb|AAC12868.1| rubisco
activase [Phaseolus vulgaris]
Length = 441
Score = 259 bits (662), Expect = 2e-68
Identities = 128/168 (76%), Positives = 154/168 (91%), Gaps = 4/168 (2%)
Frame = +2
Query: 68 MAASVSTIGTV-KTPLSLNGSGAGASVPSSAFFGSSLKKVIS-RLPNTKVSNGSFKIVAA 241
MAAS+ST+G V +T L+LNGSG GAS PSSAFFG+SLKKVIS R+PN+K+++GSFKIVAA
Sbjct: 1 MAASLSTVGAVNRTLLNLNGSGGGASGPSSAFFGTSLKKVISSRVPNSKLTSGSFKIVAA 60
Query: 242 --EIDESKQTDGDRWRGLAYDISDDQQDITRGKGMVDPLFQAPQNAGTHYAVMSSYEYIS 415
EI+E++QT+GDRWRGLAYD+SDDQQDITRGKG+VD LFQAP +AGTHYAV+SS++Y+S
Sbjct: 61 DKEIEETQQTEGDRWRGLAYDVSDDQQDITRGKGLVDSLFQAPMDAGTHYAVISSHKYLS 120
Query: 416 TGLRQYNFDNTEGGFYIAPAFMDKLIVHITKNFLTLPNIKVPLILGIW 559
GLRQYNFDN + GFYIAPAF+DKL+VHI KNF+TLPNIKVPLILG+W
Sbjct: 121 AGLRQYNFDNIKDGFYIAPAFLDKLVVHIAKNFMTLPNIKVPLILGVW 168
>sp|O98997|RCA_PHAAU Ribulose bisphosphate carboxylase/oxygenase activase, chloroplast
precursor (RuBisCO activase) (RA)
gi|8954287|gb|AAD20019.2| rubisco activase [Vigna
radiata]
Length = 439
Score = 259 bits (662), Expect = 2e-68
Identities = 133/168 (79%), Positives = 152/168 (90%), Gaps = 4/168 (2%)
Frame = +2
Query: 68 MAASVSTIGTV-KTPLSLNGSGAGASVPSSAFFGSSLKKVI-SRLPNTKVSNGSFKIVAA 241
MAASVST+G V + L+LNGSGAGAS P+SAFFG+SLKK + SR+PN+KV+NGSFKIVAA
Sbjct: 1 MAASVSTVGAVNRAILNLNGSGAGASAPTSAFFGTSLKKAVASRVPNSKVTNGSFKIVAA 60
Query: 242 E--IDESKQTDGDRWRGLAYDISDDQQDITRGKGMVDPLFQAPQNAGTHYAVMSSYEYIS 415
E I+ES+QT+ DRW+GLAYDISDDQQDITRGKGMVDPLFQAP +AGTHYAVMSSYEY+S
Sbjct: 61 EKEIEESQQTNKDRWKGLAYDISDDQQDITRGKGMVDPLFQAPMDAGTHYAVMSSYEYLS 120
Query: 416 TGLRQYNFDNTEGGFYIAPAFMDKLIVHITKNFLTLPNIKVPLILGIW 559
TGLRQ DN + GFYIAPAF+DKL+VHITKNF+TLPNIKVPLILGIW
Sbjct: 121 TGLRQ--LDNIKDGFYIAPAFLDKLVVHITKNFMTLPNIKVPLILGIW 166
>gb|AAG61120.1| ribulose-1,5-bisphosphate carboxylase/oxygenase activase 1
[Gossypium hirsutum]
Length = 438
Score = 252 bits (644), Expect = 2e-66
Identities = 132/167 (79%), Positives = 141/167 (84%), Gaps = 3/167 (1%)
Frame = +2
Query: 68 MAASVSTIGTV-KTPLSLNGSGAGASVPSSAFFGSSLKKVISRLPNT-KVSNGSFKIVAA 241
MAA+VSTIG V + PLSLNGSGAGAS PSSAF G+SLKKV +R N K GSFKIVAA
Sbjct: 1 MAAAVSTIGAVNRAPLSLNGSGAGASAPSSAFMGNSLKKVSARFNNNGKAPVGSFKIVAA 60
Query: 242 -EIDESKQTDGDRWRGLAYDISDDQQDITRGKGMVDPLFQAPQNAGTHYAVMSSYEYIST 418
EIDE QTD DRW+GLAYDISDDQQDITRGKGMVD LFQAP N GTHYAVMSSYEYIS
Sbjct: 61 KEIDEDTQTDQDRWKGLAYDISDDQQDITRGKGMVDSLFQAPMNDGTHYAVMSSYEYISQ 120
Query: 419 GLRQYNFDNTEGGFYIAPAFMDKLIVHITKNFLTLPNIKVPLILGIW 559
GLR Y+ DN GFYIAPAFMDKL+VHITKN++TLPNIKVPLILGIW
Sbjct: 121 GLRTYDLDNNMDGFYIAPAFMDKLVVHITKNYMTLPNIKVPLILGIW 167
>sp|Q40281|RCA_MALDO Ribulose bisphosphate carboxylase/oxygenase activase, chloroplast
precursor (RuBisCO activase) (RA) gi|541930|pir||S39551
ribulose-bisphosphate carboxylase activase (EC 6.3.4.-)
- apple tree gi|415852|emb|CAA79857.1|
ribulose-1,5-bisphosphate carboxylase/oxygenase activase
[Malus x domestica]
Length = 437
Score = 250 bits (638), Expect = 9e-66
Identities = 124/165 (75%), Positives = 143/165 (86%), Gaps = 1/165 (0%)
Frame = +2
Query: 68 MAASVSTIGTV-KTPLSLNGSGAGASVPSSAFFGSSLKKVISRLPNTKVSNGSFKIVAAE 244
MA +VSTIG+V + P +LNGS + ASVPSS F GSSLKKV SR N+KVS+GS +IVA+
Sbjct: 1 MATAVSTIGSVNRAPPNLNGSSSSASVPSSTFLGSSLKKVNSRFTNSKVSSGSLRIVAS- 59
Query: 245 IDESKQTDGDRWRGLAYDISDDQQDITRGKGMVDPLFQAPQNAGTHYAVMSSYEYISTGL 424
+DE KQTD DRW+GLA+D SDDQQDITRGKG VD LFQAPQ +GTH+A+MSSYEYISTGL
Sbjct: 60 VDEDKQTDKDRWKGLAFDTSDDQQDITRGKGKVDSLFQAPQGSGTHFAIMSSYEYISTGL 119
Query: 425 RQYNFDNTEGGFYIAPAFMDKLIVHITKNFLTLPNIKVPLILGIW 559
RQYNFDN G+YIAPAFMDKL+VHITKNF+TLPN+KVPLILGIW
Sbjct: 120 RQYNFDNNMDGYYIAPAFMDKLVVHITKNFMTLPNMKVPLILGIW 164
>gb|AAN18180.1| At2g39730/T5I7.3 [Arabidopsis thaliana]
Length = 474
Score = 234 bits (597), Expect = 5e-61
Identities = 118/166 (71%), Positives = 134/166 (80%), Gaps = 2/166 (1%)
Frame = +2
Query: 68 MAASVSTIGTV-KTPLSLNGSGAGA-SVPSSAFFGSSLKKVISRLPNTKVSNGSFKIVAA 241
MAA+VST+G + + PLSLNGSG+GA S P+S F G + V + K SNGSFK++A
Sbjct: 1 MAAAVSTVGAINRAPLSLNGSGSGAVSAPASTFLGKKVVTVSRFAQSNKKSNGSFKVLA- 59
Query: 242 EIDESKQTDGDRWRGLAYDISDDQQDITRGKGMVDPLFQAPQNAGTHYAVMSSYEYISTG 421
+ E KQTDGDRWRGLAYD SDDQQDITRGKGMVD +FQAP GTH+AV+SSYEY+S G
Sbjct: 60 -VKEDKQTDGDRWRGLAYDTSDDQQDITRGKGMVDSVFQAPMGTGTHHAVLSSYEYVSQG 118
Query: 422 LRQYNFDNTEGGFYIAPAFMDKLIVHITKNFLTLPNIKVPLILGIW 559
LRQYN DN GFYIAPAFMDKL+VHITKNFLTLPNIKVPLILGIW
Sbjct: 119 LRQYNLDNMMDGFYIAPAFMDKLVVHITKNFLTLPNIKVPLILGIW 164
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 517,531,653
Number of Sequences: 1393205
Number of extensions: 11723624
Number of successful extensions: 45958
Number of sequences better than 10.0: 80
Number of HSP's better than 10.0 without gapping: 43691
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 45871
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19808345223
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
