Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC012353A_C01 KMC012353A_c01
(703 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_002984.1| chemokine (C-X-C motif) ligand 6 (granulocyte c... 37 0.35
dbj|BAC38559.1| unnamed protein product [Mus musculus] 33 3.0
ref|XP_282603.1| RIKEN cDNA A330102K23 [Mus musculus] gi|2633307... 33 3.0
ref|NP_700458.1| TGF-beta induced apotosis protein 2 [Mus muscul... 33 3.0
ref|NP_079245.2| TGF-beta induced apotosis protein 2 [Homo sapie... 33 3.9
>ref|NP_002984.1| chemokine (C-X-C motif) ligand 6 (granulocyte chemotactic protein
2); Small inducible cytokine subfamily B (Cys-X-Cys),
member b; small inducible cytokine subfamily B
(Cys-X-Cys), member 6 (granulocyte chemotactic protein
2) [Homo sapiens] gi|2851486|sp|P80162|SZ06_HUMAN Small
inducible cytokine B6 precursor (CXCL6) (Granulocyte
chemotactic protein 2) (GCP-2) (Chemokine alpha 3)
(CKA-3) gi|1916230|gb|AAC51338.1| granulocyte
chemotactic protein-2 [Homo sapiens]
gi|4098961|gb|AAD00506.1| chemokine alpha 3 [Homo
sapiens] gi|15489287|gb|AAH13744.1|AAH13744 Unknown
(protein for MGC:21713) [Homo sapiens]
Length = 114
Score = 36.6 bits (83), Expect = 0.35
Identities = 22/43 (51%), Positives = 30/43 (69%), Gaps = 1/43 (2%)
Frame = +2
Query: 542 VPSSRANAIIGGSASL-ALLALDLVIGPPSPLSAP*PLSLSLS 667
+PSSRA + G S SL ALLAL L++ PP PL++ P+S L+
Sbjct: 3 LPSSRAARVPGPSGSLCALLALLLLLTPPGPLASAGPVSAVLT 45
>dbj|BAC38559.1| unnamed protein product [Mus musculus]
Length = 597
Score = 33.5 bits (75), Expect = 3.0
Identities = 20/56 (35%), Positives = 26/56 (45%)
Frame = -2
Query: 672 DEDKDKDKGHGALKGLGGPMTRSRAKRAKEALPPMIALALEEGTNVHELEPKLVNF 505
+ED D DKG G ++GLG E +P L +GT VHE K +F
Sbjct: 394 EEDDDDDKGDGFVEGLGA---------HTEVVPLPSVLCYSDGTAVHESHTKNASF 440
>ref|XP_282603.1| RIKEN cDNA A330102K23 [Mus musculus] gi|26333079|dbj|BAC30257.1|
unnamed protein product [Mus musculus]
Length = 585
Score = 33.5 bits (75), Expect = 3.0
Identities = 20/56 (35%), Positives = 26/56 (45%)
Frame = -2
Query: 672 DEDKDKDKGHGALKGLGGPMTRSRAKRAKEALPPMIALALEEGTNVHELEPKLVNF 505
+ED D DKG G ++GLG E +P L +GT VHE K +F
Sbjct: 382 EEDDDDDKGDGFVEGLGA---------HTEVVPLPSVLCYSDGTAVHESHTKNASF 428
>ref|NP_700458.1| TGF-beta induced apotosis protein 2 [Mus musculus]
gi|24418708|sp|P59055|TAI2_MOUSE TGF-beta induced
apoptosis protein 2 (TAIP-2) gi|23096112|dbj|BAC16315.1|
TGF-beta induced apoptosis protein 2 [Mus musculus]
Length = 585
Score = 33.5 bits (75), Expect = 3.0
Identities = 20/56 (35%), Positives = 26/56 (45%)
Frame = -2
Query: 672 DEDKDKDKGHGALKGLGGPMTRSRAKRAKEALPPMIALALEEGTNVHELEPKLVNF 505
+ED D DKG G ++GLG E +P L +GT VHE K +F
Sbjct: 382 EEDDDDDKGDGFVEGLGA---------HTEVVPLPSVLCYSDGTAVHESHTKNASF 428
>ref|NP_079245.2| TGF-beta induced apotosis protein 2 [Homo sapiens]
gi|24418715|sp|Q8WYN3|TAI2_HUMAN TGF-beta induced
apoptosis protein 2 (TAIP-2) gi|17907791|dbj|BAB79449.1|
TGF-beta induced apotosis protein 2 [Homo sapiens]
Length = 585
Score = 33.1 bits (74), Expect = 3.9
Identities = 20/56 (35%), Positives = 26/56 (45%)
Frame = -2
Query: 672 DEDKDKDKGHGALKGLGGPMTRSRAKRAKEALPPMIALALEEGTNVHELEPKLVNF 505
+ED D DKG G ++GLG E +P L +GT VHE K +F
Sbjct: 382 EEDDDDDKGDGFVEGLG---------THAEVVPLPSVLCYSDGTAVHESHAKNASF 428
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 574,742,952
Number of Sequences: 1393205
Number of extensions: 11901916
Number of successful extensions: 26946
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 26112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26933
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 32250355128
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
