Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC012341A_C01 KMC012341A_c01
(549 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAA98183.1| RAB11G [Lotus japonicus] 226 3e-66
pir||S52646 GTP-binding protein gmr2 - soybean 221 2e-64
emb|CAA54506.1| GTPase [Glycine max] 221 2e-64
pir||T03626 GTP-binding protein Rab11e - common tobacco (fragmen... 208 3e-60
pir||S52024 GTP-binding protein bra - rape gi|289370|gb|AAA68983... 206 5e-59
>emb|CAA98183.1| RAB11G [Lotus japonicus]
Length = 219
Score = 226 bits (576), Expect(2) = 3e-66
Identities = 114/116 (98%), Positives = 114/116 (98%)
Frame = +3
Query: 120 GEEYLFKIVIIGDSAVGKSNLLSRYARNEFNMHSKATIGVEFQTQSLEIDSKEVKAQIWD 299
GEEYLFKIVIIGDSAVGKSNLLSRYARNEFNMHSKATIGVEFQTQSLEIDSKEVKAQIWD
Sbjct: 9 GEEYLFKIVIIGDSAVGKSNLLSRYARNEFNMHSKATIGVEFQTQSLEIDSKEVKAQIWD 68
Query: 300 TAGQERFRAVTSAYYRGAVGALIVYDITRRTTFDSVSRWLDELKTHCDTTGAMMRV 467
TAGQERFRAVTSAYYRGAVGALIVYDITRRTTFDSVSRWLDELKTHCDTT AMM V
Sbjct: 69 TAGQERFRAVTSAYYRGAVGALIVYDITRRTTFDSVSRWLDELKTHCDTTVAMMLV 124
Score = 47.4 bits (111), Expect(2) = 3e-66
Identities = 23/26 (88%), Positives = 23/26 (88%)
Frame = +1
Query: 469 GNKCDLENIRAVSIEEGKSLAEGARL 546
GNKCDLENIRAVSIEEGKSLAE L
Sbjct: 125 GNKCDLENIRAVSIEEGKSLAEAQGL 150
>pir||S52646 GTP-binding protein gmr2 - soybean
Length = 219
Score = 221 bits (563), Expect(2) = 2e-64
Identities = 111/116 (95%), Positives = 112/116 (95%)
Frame = +3
Query: 120 GEEYLFKIVIIGDSAVGKSNLLSRYARNEFNMHSKATIGVEFQTQSLEIDSKEVKAQIWD 299
GEEYLFKIVIIGDSAVGKSNLLSRYARNEFNMHSKATIGVEFQTQ LEIDSKEVKAQIWD
Sbjct: 9 GEEYLFKIVIIGDSAVGKSNLLSRYARNEFNMHSKATIGVEFQTQCLEIDSKEVKAQIWD 68
Query: 300 TAGQERFRAVTSAYYRGAVGALIVYDITRRTTFDSVSRWLDELKTHCDTTGAMMRV 467
TAGQERFRAVTSAYYRGAVGALIVYDI+RRTTFDSV RWLDELKTHCDTT AMM V
Sbjct: 69 TAGQERFRAVTSAYYRGAVGALIVYDISRRTTFDSVGRWLDELKTHCDTTVAMMLV 124
Score = 46.2 bits (108), Expect(2) = 2e-64
Identities = 22/26 (84%), Positives = 23/26 (87%)
Frame = +1
Query: 469 GNKCDLENIRAVSIEEGKSLAEGARL 546
GNKCDLENIRAVSI+EGKSLAE L
Sbjct: 125 GNKCDLENIRAVSIDEGKSLAEAEGL 150
>emb|CAA54506.1| GTPase [Glycine max]
Length = 219
Score = 221 bits (563), Expect(2) = 2e-64
Identities = 111/116 (95%), Positives = 112/116 (95%)
Frame = +3
Query: 120 GEEYLFKIVIIGDSAVGKSNLLSRYARNEFNMHSKATIGVEFQTQSLEIDSKEVKAQIWD 299
GEEYLFKIVIIGDSAVGKSNLLSRYARNEFNMHSKATIGVEFQTQ LEIDSKEVKAQIWD
Sbjct: 9 GEEYLFKIVIIGDSAVGKSNLLSRYARNEFNMHSKATIGVEFQTQCLEIDSKEVKAQIWD 68
Query: 300 TAGQERFRAVTSAYYRGAVGALIVYDITRRTTFDSVSRWLDELKTHCDTTGAMMRV 467
TAGQERFRAVTSAYYRGAVGALIVYDI+RRTTFDSV RWLDELKTHCDTT AMM V
Sbjct: 69 TAGQERFRAVTSAYYRGAVGALIVYDISRRTTFDSVGRWLDELKTHCDTTVAMMLV 124
Score = 46.2 bits (108), Expect(2) = 2e-64
Identities = 22/26 (84%), Positives = 23/26 (87%)
Frame = +1
Query: 469 GNKCDLENIRAVSIEEGKSLAEGARL 546
GNKCDLENIRAVSI+EGKSLAE L
Sbjct: 125 GNKCDLENIRAVSIDEGKSLAEAEGL 150
>pir||T03626 GTP-binding protein Rab11e - common tobacco (fragment)
gi|623584|gb|AAA74116.1| putative
Length = 209
Score = 208 bits (529), Expect(2) = 3e-60
Identities = 103/115 (89%), Positives = 108/115 (93%)
Frame = +3
Query: 123 EEYLFKIVIIGDSAVGKSNLLSRYARNEFNMHSKATIGVEFQTQSLEIDSKEVKAQIWDT 302
EEYLFKIVIIGDSAVGKSNLL+RYARNEFN+HSKATIGVEFQTQ+LEID KEVKAQIWDT
Sbjct: 1 EEYLFKIVIIGDSAVGKSNLLTRYARNEFNLHSKATIGVEFQTQTLEIDGKEVKAQIWDT 60
Query: 303 AGQERFRAVTSAYYRGAVGALIVYDITRRTTFDSVSRWLDELKTHCDTTGAMMRV 467
AGQERFRAVTSAYYRGA GAL+VYDITRRTTFDS+ RWLDELKTH DTT A M V
Sbjct: 61 AGQERFRAVTSAYYRGAFGALVVYDITRRTTFDSIPRWLDELKTHSDTTVARMLV 115
Score = 45.4 bits (106), Expect(2) = 3e-60
Identities = 20/22 (90%), Positives = 22/22 (99%)
Frame = +1
Query: 469 GNKCDLENIRAVSIEEGKSLAE 534
GNKCDL+NIRAVS+EEGKSLAE
Sbjct: 116 GNKCDLDNIRAVSVEEGKSLAE 137
>pir||S52024 GTP-binding protein bra - rape gi|289370|gb|AAA68983.1| small
GTP-binding protein
Length = 219
Score = 206 bits (525), Expect(2) = 5e-59
Identities = 102/116 (87%), Positives = 110/116 (93%)
Frame = +3
Query: 120 GEEYLFKIVIIGDSAVGKSNLLSRYARNEFNMHSKATIGVEFQTQSLEIDSKEVKAQIWD 299
GEEYLFKIVIIGDSAVGKSNLLSRYARNEFN HSKATIGVEFQTQS+EI+ K+VKAQIWD
Sbjct: 8 GEEYLFKIVIIGDSAVGKSNLLSRYARNEFNAHSKATIGVEFQTQSMEIEGKDVKAQIWD 67
Query: 300 TAGQERFRAVTSAYYRGAVGALIVYDITRRTTFDSVSRWLDELKTHCDTTGAMMRV 467
TAGQERFRAVTSAYYRGAVGAL+VYDI+RR+TF+SV+RWLDELKTH DTT A M V
Sbjct: 68 TAGQERFRAVTSAYYRGAVGALVVYDISRRSTFESVARWLDELKTHSDTTVARMLV 123
Score = 43.1 bits (100), Expect(2) = 5e-59
Identities = 18/22 (81%), Positives = 22/22 (99%)
Frame = +1
Query: 469 GNKCDLENIRAVSIEEGKSLAE 534
GNKCDL+N+RAVS+EEGK+LAE
Sbjct: 124 GNKCDLDNMRAVSVEEGKALAE 145
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 462,123,961
Number of Sequences: 1393205
Number of extensions: 10014458
Number of successful extensions: 54169
Number of sequences better than 10.0: 2268
Number of HSP's better than 10.0 without gapping: 46452
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 52722
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 18947112822
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
