Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC012290A_C01 KMC012290A_c01
(631 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_189030.1| F-box protein family; protein id: At3g23880.1 [... 101 7e-21
ref|NP_192993.1| F-box protein family; protein id: At4g12560.1 [... 66 3e-10
ref|NP_566322.1| F-box protein family; protein id: At3g07870.1, ... 65 1e-09
ref|NP_566277.1| F-box protein family; protein id: At3g06240.1, ... 52 5e-06
dbj|BAC42921.1| unknown protein [Arabidopsis thaliana] 52 5e-06
>ref|NP_189030.1| F-box protein family; protein id: At3g23880.1 [Arabidopsis
thaliana] gi|9294656|dbj|BAB03005.1|
gb|AAF30317.1~gene_id:F14O13.6~similar to unknown
protein [Arabidopsis thaliana]
gi|26449693|dbj|BAC41970.1| unknown protein [Arabidopsis
thaliana]
Length = 364
Score = 101 bits (252), Expect = 7e-21
Identities = 61/156 (39%), Positives = 88/156 (56%)
Frame = -1
Query: 628 SGKFVSGTLNWAANYSVGVSSLWIIVSLDLQKETYKEILPPDYEKEECSTPTLSVLKGCL 449
SG +++GTLNWAA S SS W I+S D+ ++ +KE+ P C T TL L+GCL
Sbjct: 214 SGIYINGTLNWAATSS---SSSWTIISYDMSRDEFKELPGPVCCGRGCFTMTLGDLRGCL 270
Query: 448 CMNYDHKRTDFVVWMMKDYGVRESWVKLVTFPYLPNPEDFSYSGPYLISENGEVLLMFEF 269
M K + VW+MK++G SW KL++ P L + + P IS+ VLL F
Sbjct: 271 SMVCYCKGANADVWVMKEFGEVYSWSKLLSIPGLTD-----FVRPLWISDGLVVLLEFRS 325
Query: 268 DLVMYDPRDQSFRYPRLESGKGWFDAEVYIETLISP 161
L +Y+ + F YP S G DA+VY++T++SP
Sbjct: 326 GLALYNCSNGRFHYPVSNSISGCRDAKVYLKTMVSP 361
>ref|NP_192993.1| F-box protein family; protein id: At4g12560.1 [Arabidopsis
thaliana] gi|7487230|pir||T07648 hypothetical protein
T1P17.150 - Arabidopsis thaliana
gi|4725955|emb|CAB41726.1| putative protein [Arabidopsis
thaliana] gi|7267958|emb|CAB78299.1| putative protein
[Arabidopsis thaliana]
Length = 408
Score = 66.2 bits (160), Expect = 3e-10
Identities = 45/159 (28%), Positives = 76/159 (47%), Gaps = 6/159 (3%)
Frame = -1
Query: 625 GKFVSGTLNWAANYSVGVSSLWIIVSLDLQKETYKEILPPDY--EKEECSTPTLSVLKGC 452
G +L+W G+ + +IV DL E ++ + P+ + VL GC
Sbjct: 212 GVLAGNSLHWVLPRRPGLIAFNLIVRFDLALEEFEIVRFPEAVANGNVDIQMDIGVLDGC 271
Query: 451 LCM--NYDHKRTDFVVWMMKDYGVRESWVKLVTFPYLPNPEDFSYSGPYLISENGEVLL- 281
LC+ NYD D VWMMK+Y VR+SW K+ T + + FSY P + S++ + +L
Sbjct: 272 LCLMCNYDQSYVD--VWMMKEYNVRDSWTKVFTVQKPKSVKSFSYMRPLVYSKDKKKVLL 329
Query: 280 -MFEFDLVMYDPRDQSFRYPRLESGKGWFDAEVYIETLI 167
+ LV +D + R++ + AE+ + +L+
Sbjct: 330 ELNNTKLVWFDLESKKMSTLRIKDCPSSYSAELVVSSLV 368
>ref|NP_566322.1| F-box protein family; protein id: At3g07870.1, supported by cDNA:
gi_15983478 [Arabidopsis thaliana]
gi|6648199|gb|AAF21197.1|AC013483_21 unknown protein
[Arabidopsis thaliana]
gi|15983479|gb|AAL11607.1|AF424614_1 AT3g07870/F17A17_21
[Arabidopsis thaliana]
Length = 417
Score = 64.7 bits (156), Expect = 1e-09
Identities = 49/145 (33%), Positives = 64/145 (43%), Gaps = 17/145 (11%)
Frame = -1
Query: 553 VSLDLQKETYKEILPPDYEKEECSTPTLSVLKGCLCMNYDHKRTDFVVWMMKDYGVRESW 374
VS DL+ E +KEI PD + L LKGCLC +W+MK YGV+ESW
Sbjct: 263 VSFDLEDEEFKEIPKPDCGGLNRTNHRLVNLKGCLCAVVYGNYGKLDIWVMKTYGVKESW 322
Query: 373 VKLVTF-PYLP---------------NPEDFSYSGPYLISENGEVLLMFEFD-LVMYDPR 245
K + YLP N E+ + ENGE+LL ++ LV YDP+
Sbjct: 323 GKEYSIGTYLPKGLKQNLDRPMWIWKNAENGKVVRVLCLLENGEILLEYKSRVLVAYDPK 382
Query: 244 DQSFRYPRLESGKGWFDAEVYIETL 170
F+ WF V+ TL
Sbjct: 383 LGKFKDLLFHGLPNWFHTVVHAGTL 407
>ref|NP_566277.1| F-box protein family; protein id: At3g06240.1, supported by cDNA:
108003. [Arabidopsis thaliana]
gi|6862928|gb|AAF30317.1|AC018907_17 hypothetical
protein [Arabidopsis thaliana]
gi|21536665|gb|AAM60997.1| unknown [Arabidopsis
thaliana]
Length = 416
Score = 52.4 bits (124), Expect = 5e-06
Identities = 46/168 (27%), Positives = 80/168 (47%), Gaps = 11/168 (6%)
Frame = -1
Query: 631 SSGKFVSGTLNWAANYSVGVSSLWIIVSLDLQKETYKEILPPDYEKEECSTP----TLSV 464
+SG +G ++W ++ + ++V+ D+Q E ++E+ PD E E+CS +
Sbjct: 255 TSGVHFNGAIHWV--FTESRHNQRVVVAFDIQTEEFREMPVPD-EAEDCSHRFSNFVVGS 311
Query: 463 LKGCLCMNYDHKRTDFVVWMMKDYGVRESWVKL-VTFPYLPNPEDFSYSGPYLISENG-E 290
L G LC+ +W+M +YG +SW ++ + Y P ++N E
Sbjct: 312 LNGRLCVVNSCYDVHDDIWVMSEYGEAKSWSRIRINLLY-------RSMKPLCSTKNDEE 364
Query: 289 VLLMFEFDLVMYD-----PRDQSFRYPRLESGKGWFDAEVYIETLISP 161
VLL + DLV+Y+ + +L G F+A Y+E+LISP
Sbjct: 365 VLLELDGDLVLYNFETNASSNLGICGVKLSDG---FEANTYVESLISP 409
>dbj|BAC42921.1| unknown protein [Arabidopsis thaliana]
Length = 427
Score = 52.4 bits (124), Expect = 5e-06
Identities = 46/168 (27%), Positives = 80/168 (47%), Gaps = 11/168 (6%)
Frame = -1
Query: 631 SSGKFVSGTLNWAANYSVGVSSLWIIVSLDLQKETYKEILPPDYEKEECSTP----TLSV 464
+SG +G ++W ++ + ++V+ D+Q E ++E+ PD E E+CS +
Sbjct: 266 TSGVHFNGAIHWV--FTESRHNQRVVVAFDIQTEEFREMPVPD-EAEDCSHRFSNFVVGS 322
Query: 463 LKGCLCMNYDHKRTDFVVWMMKDYGVRESWVKL-VTFPYLPNPEDFSYSGPYLISENG-E 290
L G LC+ +W+M +YG +SW ++ + Y P ++N E
Sbjct: 323 LNGRLCVVNSCYDVHDDIWVMSEYGEAKSWSRIRINLLY-------RSMKPLCSTKNDEE 375
Query: 289 VLLMFEFDLVMYD-----PRDQSFRYPRLESGKGWFDAEVYIETLISP 161
VLL + DLV+Y+ + +L G F+A Y+E+LISP
Sbjct: 376 VLLELDGDLVLYNFETNASSNLGICGVKLSDG---FEANTYVESLISP 420
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 525,509,374
Number of Sequences: 1393205
Number of extensions: 11210499
Number of successful extensions: 27218
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 26274
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27196
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 25870486187
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
