Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC012279A_C01 KMC012279A_c01
(516 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_228127.1| hypothetical protein [Thermotoga maritima] gi|7... 33 1.5
ref|NP_066232.2| NADH dehydrogenase subunit 4 [Taenia crassiceps... 33 2.5
gb|AAO51886.1| similar to Mus musculus (Mouse). 13 days embryo h... 33 2.5
dbj|BAA83540.3| NADH dehydrogenase subunit 4 [Taenia crassiceps] 33 2.5
gb|AAO52507.1| similar to Plasmodium falciparum (isolate 3D7). 1... 32 3.3
>ref|NP_228127.1| hypothetical protein [Thermotoga maritima] gi|7462488|pir||B72392
hypothetical protein - Thermotoga maritima (strain MSB8)
gi|4980816|gb|AAD35403.1|AE001713_7 hypothetical protein
[Thermotoga maritima]
Length = 83
Score = 33.5 bits (75), Expect = 1.5
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = -3
Query: 163 FCFWTYAL*PWGLGFGLAT*VSWGVIFILELKF 65
FCFW++ PW G G+ + W VI + F
Sbjct: 4 FCFWSWGFWPWNWGGGVIMMIFWAVILVFLFVF 36
>ref|NP_066232.2| NADH dehydrogenase subunit 4 [Taenia crassiceps]
gi|12248322|gb|AAG13172.2| NADH dehydrogenase subunit 4
[Taenia crassiceps]
Length = 417
Score = 32.7 bits (73), Expect = 2.5
Identities = 17/42 (40%), Positives = 24/42 (56%), Gaps = 6/42 (14%)
Frame = -3
Query: 253 LGGMAPVLICTMLLCPYSTY--VGL----FFSFLLLFCFWTY 146
LGG+ P+++C LL Y VG+ +F FL+ CFW Y
Sbjct: 370 LGGLVPLVLCGHLLIRSEFYESVGVSCYSYFYFLVFSCFWCY 411
>gb|AAO51886.1| similar to Mus musculus (Mouse). 13 days embryo heart cDNA, RIKEN
full-length enriched library, clone:D330046B13
product:minichromosome maintenance deficient (S.
cerevisiae) 3-associated protein, full insert sequence
(Fragment) [Dictyostelium discoideum]
Length = 2102
Score = 32.7 bits (73), Expect = 2.5
Identities = 18/46 (39%), Positives = 25/46 (54%)
Frame = +3
Query: 57 ELKNFNSKINITPQETQVAKPKPKPQGYKA*VQKQNKRRKEKNKPT 194
EL+ SK+ PQ+ Q+ + KP PQ V+KQ K EK+ T
Sbjct: 1239 ELEKSTSKVQSLPQQPQILQTKP-PQSSMPIVKKQTKSYSEKSNKT 1283
>dbj|BAA83540.3| NADH dehydrogenase subunit 4 [Taenia crassiceps]
Length = 161
Score = 32.7 bits (73), Expect = 2.5
Identities = 17/42 (40%), Positives = 24/42 (56%), Gaps = 6/42 (14%)
Frame = -3
Query: 253 LGGMAPVLICTMLLCPYSTY--VGL----FFSFLLLFCFWTY 146
LGG+ P+++C LL Y VG+ +F FL+ CFW Y
Sbjct: 114 LGGLVPLVLCGHLLIRSEFYESVGVSCYSYFYFLVFSCFWCY 155
>gb|AAO52507.1| similar to Plasmodium falciparum (isolate 3D7). 10b antigen, putative
[Dictyostelium discoideum]
Length = 3770
Score = 32.3 bits (72), Expect = 3.3
Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 7/57 (12%)
Frame = -2
Query: 212 VPLQHIRRLVF-LLSSLVLFLDLCFITLGLG-----FW-LGHLSFLGCDIYFRIEVF 63
V ++ + R+ F LL V D+ F+ L +G +W SFL CD+Y ++EVF
Sbjct: 1851 VHVEFLGRVSFTLLDESVTMKDIPFVQLNIGEFNSDYWGWEEYSFLSCDMYLKVEVF 1907
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 480,854,867
Number of Sequences: 1393205
Number of extensions: 11178713
Number of successful extensions: 29348
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 28346
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29295
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 16154357632
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
