Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC012264A_C01 KMC012264A_c01
(674 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_180258.2| putative Na+ dependent ileal bile acid transpor... 166 2e-40
gb|AAM18095.1|AF498303_1 putative sodium-dependent bile acid sym... 165 6e-40
dbj|BAB40160.1| P0707D10.18 [Oryza sativa (japonica cultivar-gro... 154 8e-37
pir||T02645 hypothetical protein At2g26900 [imported] - Arabidop... 128 6e-29
ref|ZP_00115014.1| hypothetical protein [Synechococcus sp. WH 8102] 66 5e-10
>ref|NP_180258.2| putative Na+ dependent ileal bile acid transporter; protein id:
At2g26900.1, supported by cDNA: gi_20269900 [Arabidopsis
thaliana]
Length = 409
Score = 166 bits (421), Expect = 2e-40
Identities = 88/138 (63%), Positives = 105/138 (75%), Gaps = 1/138 (0%)
Frame = +3
Query: 264 THLDVRGGVSLHENGRSCAIRSELRGPVFAAARSPLVNLKPKRNSQILCKATTDLSGDVP 443
THLD VS+ +G S I++ P+ SP+ L+ + +++CKA +SGD+P
Sbjct: 32 THLDFPKLVSVSNSGISLRIQNSK--PI-----SPVFALEATSSRRVVCKAAAGVSGDLP 84
Query: 444 GSSG-ELSQYEKVIETLTTLFPLWVILGALVGIYKPSAVTWLETDLFTLGLGFLMLSMGL 620
S+ ELSQYEK+IE LTTLFPLWVILG LVGI+KPS VTWLETDLFTLGLGFLMLSMGL
Sbjct: 85 ESTPKELSQYEKIIELLTTLFPLWVILGTLVGIFKPSLVTWLETDLFTLGLGFLMLSMGL 144
Query: 621 TLTFEDFRRCMRNPWTVG 674
TLTFEDFRRC+RNPWTVG
Sbjct: 145 TLTFEDFRRCLRNPWTVG 162
>gb|AAM18095.1|AF498303_1 putative sodium-dependent bile acid symporter [Arabidopsis
thaliana]
Length = 409
Score = 165 bits (417), Expect = 6e-40
Identities = 87/138 (63%), Positives = 105/138 (76%), Gaps = 1/138 (0%)
Frame = +3
Query: 264 THLDVRGGVSLHENGRSCAIRSELRGPVFAAARSPLVNLKPKRNSQILCKATTDLSGDVP 443
THLD VS+ +G S I++ P+ SP+ L+ + +++CKA +SGD+P
Sbjct: 32 THLDFPKLVSVSNSGISLRIQNSK--PI-----SPVFALEATSSRRVVCKAAAGVSGDLP 84
Query: 444 GSSG-ELSQYEKVIETLTTLFPLWVILGALVGIYKPSAVTWLETDLFTLGLGFLMLSMGL 620
S+ ELSQYEK+IE LTTLFPLWVILG LVGI+KPS VTWLETDLF+LGLGFLMLSMGL
Sbjct: 85 ESTPKELSQYEKIIELLTTLFPLWVILGTLVGIFKPSLVTWLETDLFSLGLGFLMLSMGL 144
Query: 621 TLTFEDFRRCMRNPWTVG 674
TLTFEDFRRC+RNPWTVG
Sbjct: 145 TLTFEDFRRCLRNPWTVG 162
>dbj|BAB40160.1| P0707D10.18 [Oryza sativa (japonica cultivar-group)]
Length = 408
Score = 154 bits (390), Expect = 8e-37
Identities = 74/108 (68%), Positives = 88/108 (80%), Gaps = 2/108 (1%)
Frame = +3
Query: 357 ARSPLVNLKPK-RNSQILCKATTDLSGDVPGS-SGELSQYEKVIETLTTLFPLWVILGAL 530
A +P P R+ Q+LCKA ++S ++P S E +QYEK++E LTTLFP+WVILG +
Sbjct: 53 ASAPATTAAPALRSCQLLCKAEANISSNLPESIPSEANQYEKIVELLTTLFPVWVILGTI 112
Query: 531 VGIYKPSAVTWLETDLFTLGLGFLMLSMGLTLTFEDFRRCMRNPWTVG 674
+GIYKPS VTWLETDLFT+GLGFLMLSMGLTLTFEDFRRCMRNPWTVG
Sbjct: 113 IGIYKPSMVTWLETDLFTVGLGFLMLSMGLTLTFEDFRRCMRNPWTVG 160
>pir||T02645 hypothetical protein At2g26900 [imported] - Arabidopsis thaliana
gi|3426051|gb|AAC32250.1| putative Na+ dependent ileal
bile acid transporter [Arabidopsis thaliana]
Length = 338
Score = 128 bits (322), Expect = 6e-29
Identities = 65/94 (69%), Positives = 73/94 (77%), Gaps = 1/94 (1%)
Frame = +3
Query: 396 SQILCKATTDLSGDVPGSSG-ELSQYEKVIETLTTLFPLWVILGALVGIYKPSAVTWLET 572
S+++CKA +SGD+P S+ ELSQYEK+IE LTTLFPLWV TWLET
Sbjct: 22 SRVVCKAAAGVSGDLPESTPKELSQYEKIIELLTTLFPLWV--------------TWLET 67
Query: 573 DLFTLGLGFLMLSMGLTLTFEDFRRCMRNPWTVG 674
DLFTLGLGFLMLSMGLTLTFEDFRRC+RNPWTVG
Sbjct: 68 DLFTLGLGFLMLSMGLTLTFEDFRRCLRNPWTVG 101
>ref|ZP_00115014.1| hypothetical protein [Synechococcus sp. WH 8102]
Length = 393
Score = 65.9 bits (159), Expect = 5e-10
Identities = 31/64 (48%), Positives = 38/64 (58%)
Frame = +3
Query: 480 IETLTTLFPLWVILGALVGIYKPSAVTWLETDLFTLGLGFLMLSMGLTLTFEDFRRCMRN 659
+E TTLFPLW +LG+L+ + P W L T+GLG +ML MGL LT DF R R
Sbjct: 81 LERFTTLFPLWTLLGSLLALLHPPLFVWFRGPLITIGLGVIMLGMGLGLTPRDFLRVSRQ 140
Query: 660 PWTV 671
P V
Sbjct: 141 PRAV 144
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 654,775,659
Number of Sequences: 1393205
Number of extensions: 15288671
Number of successful extensions: 42276
Number of sequences better than 10.0: 67
Number of HSP's better than 10.0 without gapping: 40185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 42235
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 29704274460
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
