Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC012234A_C01 KMC012234A_c01
(576 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_564489.1| expressed protein; protein id: At1g44000.1, sup... 145 3e-34
gb|AAF79680.1|AC022314_21 F9C16.20 [Arabidopsis thaliana] 135 4e-31
ref|NP_192928.1| putative protein; protein id: At4g11910.1 [Arab... 109 3e-23
ref|NP_567673.1| expressed protein; protein id: At4g22920.1, sup... 101 6e-21
gb|AAM64476.1| unknown [Arabidopsis thaliana] 101 6e-21
>ref|NP_564489.1| expressed protein; protein id: At1g44000.1, supported by cDNA:
gi_15028026, supported by cDNA: gi_20259312 [Arabidopsis
thaliana] gi|15028027|gb|AAK76544.1| unknown protein
[Arabidopsis thaliana] gi|20259313|gb|AAM14392.1|
unknown protein [Arabidopsis thaliana]
Length = 260
Score = 145 bits (367), Expect = 3e-34
Identities = 71/119 (59%), Positives = 89/119 (74%)
Frame = -1
Query: 573 NEMCLHVHCFVSGPNPFLDLAAEFRYHIFSKEMPLVLKAIQYGDSVLFHEHPELLDSIVR 394
+E+ LH+HC VSG + D+AAE RYHIFSKE+PLVLKA+ +GDSV+F E+PEL+D+ V
Sbjct: 143 DELRLHIHCCVSGMSLLQDVAAELRYHIFSKELPLVLKAVVHGDSVMFRENPELMDAYVW 202
Query: 393 IYFHSSSKKYNRMECWGPLKDAMEGKQADQIQGLISRDCPPEKCRSPKSIFQALFAFLL 217
+YFHSS+ KYNR+ECWGPLKDA +GKQ QG +S + R KSIF LF FLL
Sbjct: 203 VYFHSSTPKYNRIECWGPLKDAAKGKQQGNHQGFLSSTTSRKLIRH-KSIFHTLFTFLL 260
>gb|AAF79680.1|AC022314_21 F9C16.20 [Arabidopsis thaliana]
Length = 299
Score = 135 bits (340), Expect = 4e-31
Identities = 61/96 (63%), Positives = 78/96 (80%)
Frame = -1
Query: 573 NEMCLHVHCFVSGPNPFLDLAAEFRYHIFSKEMPLVLKAIQYGDSVLFHEHPELLDSIVR 394
+E+ LH+HC VSG + D+AAE RYHIFSKE+PLVLKA+ +GDSV+F E+PEL+D+ V
Sbjct: 143 DELRLHIHCCVSGMSLLQDVAAELRYHIFSKELPLVLKAVVHGDSVMFRENPELMDAYVW 202
Query: 393 IYFHSSSKKYNRMECWGPLKDAMEGKQADQIQGLIS 286
+YFHSS+ KYNR+ECWGPLKDA +GKQ QG +S
Sbjct: 203 VYFHSSTPKYNRIECWGPLKDAAKGKQQGNHQGFLS 238
>ref|NP_192928.1| putative protein; protein id: At4g11910.1 [Arabidopsis thaliana]
gi|7487452|pir||T09350 hypothetical protein T26M18.120 -
Arabidopsis thaliana gi|5002526|emb|CAB44329.1| putative
protein [Arabidopsis thaliana]
gi|7267892|emb|CAB78234.1| putative protein [Arabidopsis
thaliana]
Length = 466
Score = 109 bits (272), Expect = 3e-23
Identities = 54/114 (47%), Positives = 76/114 (66%), Gaps = 6/114 (5%)
Frame = -1
Query: 576 KNEMCLHVHCFVSGPNPFLDLAAEFRYHIFSKEMPLVLKAIQYGDSVLFHEHPELLDSIV 397
K +M LHVHC +SG + FL+L A+ RY+IF KE+P+VL+A +GD L + HPEL +S V
Sbjct: 122 KGKMSLHVHCHISGGHFFLNLIAKLRYYIFCKELPVVLEAFAHGDEYLLNNHPELQESPV 181
Query: 396 RIYFHSSSKKYNRMECWGPLKDAM-----EGKQADQIQGLISRDCPPE-KCRSP 253
+YFHS+ +YN++ECWGPL +AM +G+ + + L CP E KC P
Sbjct: 182 WVYFHSNIPEYNKVECWGPLWEAMSQHQHDGRTHKKSETLPELPCPDECKCCFP 235
Score = 97.4 bits (241), Expect = 1e-19
Identities = 43/83 (51%), Positives = 60/83 (71%)
Frame = -1
Query: 576 KNEMCLHVHCFVSGPNPFLDLAAEFRYHIFSKEMPLVLKAIQYGDSVLFHEHPELLDSIV 397
K+ M LHVHC +SG + LDL AE RY IF KE+P+VLKA +GD + + +PEL ++ V
Sbjct: 315 KSNMSLHVHCHISGDHFLLDLIAELRYFIFCKELPMVLKAFVHGDENMLNNYPELHEAFV 374
Query: 396 RIYFHSSSKKYNRMECWGPLKDA 328
+YFHS+ K+N++ECWG L +A
Sbjct: 375 WVYFHSNIPKFNKVECWGRLCEA 397
>ref|NP_567673.1| expressed protein; protein id: At4g22920.1, supported by cDNA:
29391., supported by cDNA: gi_17380887, supported by
cDNA: gi_20465936 [Arabidopsis thaliana]
gi|7486565|pir||T05123 hypothetical protein F7H19.100 -
Arabidopsis thaliana gi|3292817|emb|CAA19807.1|
hypothetical protein [Arabidopsis thaliana]
gi|7269139|emb|CAB79247.1| hypothetical protein
[Arabidopsis thaliana] gi|17380888|gb|AAL36256.1|
unknown protein [Arabidopsis thaliana]
gi|20465937|gb|AAM20154.1| unknown protein [Arabidopsis
thaliana]
Length = 268
Score = 101 bits (252), Expect = 6e-21
Identities = 44/84 (52%), Positives = 64/84 (75%)
Frame = -1
Query: 576 KNEMCLHVHCFVSGPNPFLDLAAEFRYHIFSKEMPLVLKAIQYGDSVLFHEHPELLDSIV 397
K +M LHVHC +SG + LDL A+FRY IF KE+P+VLKA +GD L + +PEL +++V
Sbjct: 126 KGKMSLHVHCHISGGHFLLDLFAKFRYFIFCKELPVVLKAFVHGDGNLLNNYPELQEALV 185
Query: 396 RIYFHSSSKKYNRMECWGPLKDAM 325
+YFHS+ ++N++ECWGPL +A+
Sbjct: 186 WVYFHSNVNEFNKVECWGPLWEAV 209
>gb|AAM64476.1| unknown [Arabidopsis thaliana]
Length = 268
Score = 101 bits (252), Expect = 6e-21
Identities = 44/84 (52%), Positives = 64/84 (75%)
Frame = -1
Query: 576 KNEMCLHVHCFVSGPNPFLDLAAEFRYHIFSKEMPLVLKAIQYGDSVLFHEHPELLDSIV 397
K +M LHVHC +SG + LDL A+FRY IF KE+P+VLKA +GD L + +PEL +++V
Sbjct: 126 KGKMSLHVHCHISGGHFLLDLFAKFRYFIFCKELPVVLKAFVHGDGNLLNNYPELQEALV 185
Query: 396 RIYFHSSSKKYNRMECWGPLKDAM 325
+YFHS+ ++N++ECWGPL +A+
Sbjct: 186 WVYFHSNVNEFNKVECWGPLWEAV 209
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 547,093,798
Number of Sequences: 1393205
Number of extensions: 12132664
Number of successful extensions: 33248
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 32369
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33232
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 21530810025
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
