Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC012213A_C01 KMC012213A_c01
(563 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_200857.1| fasciclin-like arabinogalactan-protein (FLA12);... 84 7e-20
gb|AAK95321.1|AF410335_1 AT5g60490/muf9_140 [Arabidopsis thalian... 84 7e-20
gb|AAM62683.1| arabinogalactan protein-like [Arabidopsis thaliana] 84 2e-19
ref|NP_195937.1| fasciclin-like arabinogalactan-protein (FLA11);... 82 6e-19
gb|AAM62616.1| arabinogalactan protein-like [Arabidopsis thaliana] 82 6e-19
>ref|NP_200857.1| fasciclin-like arabinogalactan-protein (FLA12); protein id:
At5g60490.1, supported by cDNA: 15239., supported by
cDNA: gi_15294287 [Arabidopsis thaliana]
gi|9757751|dbj|BAB08232.1| contains similarity to
surface protein~gene_id:MUF9.12 [Arabidopsis thaliana]
Length = 249
Score = 84.3 bits (207), Expect(2) = 7e-20
Identities = 41/68 (60%), Positives = 54/68 (79%), Gaps = 1/68 (1%)
Frame = +1
Query: 361 FQSREPGFLNSLNDQQKNELIQFHLLPTFVSMSNFDTLSNPVRTQAGENPD-RLALNVTS 537
F + G LNSL D+Q+ ELIQFH++P++VS SNF T+SNP+RTQAG++ D LNVT+
Sbjct: 87 FTGLKAGTLNSLTDEQQVELIQFHVIPSYVSSSNFQTISNPLRTQAGDSADGHFPLNVTT 146
Query: 538 SGNTVNMT 561
SGNTVN+T
Sbjct: 147 SGNTVNIT 154
Score = 48.1 bits (113), Expect = 7e-05
Identities = 26/62 (41%), Positives = 39/62 (61%)
Frame = +2
Query: 257 WIRLLQTTQVATQINAQLINSDAGLTFFAPNDNAFSNLENLGSSTPSTTNRKTSLSNFTC 436
+IRLL++T VA Q+ QL NSD G+T FAP+D++F+ L+ G+ T ++ L F
Sbjct: 53 FIRLLKSTGVANQLYGQLNNSDNGITIFAPSDSSFTGLK-AGTLNSLTDEQQVELIQFHV 111
Query: 437 YP 442
P
Sbjct: 112 IP 113
Score = 34.3 bits (77), Expect(2) = 7e-20
Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Frame = +3
Query: 102 MKHQLFTLPVLALMFFFHSTTTLAASSPAPAPSS-SPTDIIRILKKAGGYT 251
M+H L L L+ + L+ SPA AP+ PT++ +IL+KAG +T
Sbjct: 1 MEHSLIILLFTVLLLLTTTPGILSQPSPAVAPAPPGPTNVTKILEKAGQFT 51
>gb|AAK95321.1|AF410335_1 AT5g60490/muf9_140 [Arabidopsis thaliana]
gi|23308259|gb|AAN18099.1| At5g60490/muf9_140
[Arabidopsis thaliana]
Length = 239
Score = 84.3 bits (207), Expect(2) = 7e-20
Identities = 41/68 (60%), Positives = 54/68 (79%), Gaps = 1/68 (1%)
Frame = +1
Query: 361 FQSREPGFLNSLNDQQKNELIQFHLLPTFVSMSNFDTLSNPVRTQAGENPD-RLALNVTS 537
F + G LNSL D+Q+ ELIQFH++P++VS SNF T+SNP+RTQAG++ D LNVT+
Sbjct: 87 FTGLKAGTLNSLTDEQQVELIQFHVIPSYVSSSNFQTISNPLRTQAGDSADGHFPLNVTT 146
Query: 538 SGNTVNMT 561
SGNTVN+T
Sbjct: 147 SGNTVNIT 154
Score = 48.1 bits (113), Expect = 7e-05
Identities = 26/62 (41%), Positives = 39/62 (61%)
Frame = +2
Query: 257 WIRLLQTTQVATQINAQLINSDAGLTFFAPNDNAFSNLENLGSSTPSTTNRKTSLSNFTC 436
+IRLL++T VA Q+ QL NSD G+T FAP+D++F+ L+ G+ T ++ L F
Sbjct: 53 FIRLLKSTGVANQLYGQLNNSDNGITIFAPSDSSFTGLK-AGTLNSLTDEQQVELIQFHV 111
Query: 437 YP 442
P
Sbjct: 112 IP 113
Score = 34.3 bits (77), Expect(2) = 7e-20
Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Frame = +3
Query: 102 MKHQLFTLPVLALMFFFHSTTTLAASSPAPAPSS-SPTDIIRILKKAGGYT 251
M+H L L L+ + L+ SPA AP+ PT++ +IL+KAG +T
Sbjct: 1 MEHSLIILLFTVLLLLTTTPGILSQPSPAVAPAPPGPTNVTKILEKAGQFT 51
>gb|AAM62683.1| arabinogalactan protein-like [Arabidopsis thaliana]
Length = 248
Score = 84.3 bits (207), Expect(2) = 2e-19
Identities = 41/68 (60%), Positives = 54/68 (79%), Gaps = 1/68 (1%)
Frame = +1
Query: 361 FQSREPGFLNSLNDQQKNELIQFHLLPTFVSMSNFDTLSNPVRTQAGENPD-RLALNVTS 537
F + G LNSL D+Q+ ELIQFH++P++VS SNF T+SNP+RTQAG++ D LNVT+
Sbjct: 86 FTGLKAGTLNSLTDEQQVELIQFHVIPSYVSSSNFQTISNPLRTQAGDSADGHFPLNVTT 145
Query: 538 SGNTVNMT 561
SGNTVN+T
Sbjct: 146 SGNTVNIT 153
Score = 48.1 bits (113), Expect = 7e-05
Identities = 26/62 (41%), Positives = 39/62 (61%)
Frame = +2
Query: 257 WIRLLQTTQVATQINAQLINSDAGLTFFAPNDNAFSNLENLGSSTPSTTNRKTSLSNFTC 436
+IRLL++T VA Q+ QL NSD G+T FAP+D++F+ L+ G+ T ++ L F
Sbjct: 52 FIRLLKSTGVANQLYGQLNNSDNGITIFAPSDSSFTGLK-AGTLNSLTDEQQVELIQFHV 110
Query: 437 YP 442
P
Sbjct: 111 IP 112
Score = 33.1 bits (74), Expect(2) = 2e-19
Identities = 19/51 (37%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Frame = +3
Query: 102 MKHQLFTLPVLALMFFFHSTTTLAASSPAPAPSS-SPTDIIRILKKAGGYT 251
M+H L L + ++ + TL+ SPA AP+ PT++ +IL+KAG +T
Sbjct: 1 MEHSLIIL-LFTVLLLTTTPGTLSQPSPAVAPAPPGPTNVTKILEKAGQFT 50
>ref|NP_195937.1| fasciclin-like arabinogalactan-protein (FLA11); protein id:
At5g03170.1, supported by cDNA: 14950., supported by
cDNA: gi_13430541 [Arabidopsis thaliana]
gi|11281995|pir||T48338 arabinogalactan protein-like -
Arabidopsis thaliana gi|7413594|emb|CAB86084.1|
arabinogalactan protein-like [Arabidopsis thaliana]
gi|9757768|dbj|BAB08377.1| contains similarity to
arabinogalactan protein~gene_id:MOK16.8 [Arabidopsis
thaliana] gi|13430542|gb|AAK25893.1|AF360183_1 putative
arabinogalactan protein [Arabidopsis thaliana]
gi|14532750|gb|AAK64076.1| putative arabinogalactan
protein [Arabidopsis thaliana]
Length = 246
Score = 82.0 bits (201), Expect(2) = 6e-19
Identities = 39/68 (57%), Positives = 53/68 (77%), Gaps = 1/68 (1%)
Frame = +1
Query: 361 FQSREPGFLNSLNDQQKNELIQFHLLPTFVSMSNFDTLSNPVRTQAGENPD-RLALNVTS 537
F S + G LNSL+DQQK +L+QFH+LPT ++M F T+SNP+RTQAG+ + + LN+TS
Sbjct: 85 FNSLKSGTLNSLSDQQKVQLVQFHVLPTLITMPQFQTVSNPLRTQAGDGQNGKFPLNITS 144
Query: 538 SGNTVNMT 561
SGN VN+T
Sbjct: 145 SGNQVNIT 152
Score = 48.1 bits (113), Expect = 7e-05
Identities = 28/63 (44%), Positives = 41/63 (64%), Gaps = 1/63 (1%)
Frame = +2
Query: 257 WIRLLQTTQVATQINAQLINSDA-GLTFFAPNDNAFSNLENLGSSTPSTTNRKTSLSNFT 433
+IRLL++TQ + QIN QL +S + GLT FAP DNAF++L++ G+ + +K L F
Sbjct: 50 FIRLLKSTQASDQINTQLNSSSSNGLTVFAPTDNAFNSLKS-GTLNSLSDQQKVQLVQFH 108
Query: 434 CYP 442
P
Sbjct: 109 VLP 111
Score = 33.5 bits (75), Expect(2) = 6e-19
Identities = 18/38 (47%), Positives = 22/38 (57%)
Frame = +3
Query: 138 LMFFFHSTTTLAASSPAPAPSSSPTDIIRILKKAGGYT 251
L FF T +PAP PS PT+I IL+KAG +T
Sbjct: 12 LFIFFLVIATTYGQAPAPGPSG-PTNITAILEKAGQFT 48
>gb|AAM62616.1| arabinogalactan protein-like [Arabidopsis thaliana]
Length = 246
Score = 82.0 bits (201), Expect(2) = 6e-19
Identities = 39/68 (57%), Positives = 53/68 (77%), Gaps = 1/68 (1%)
Frame = +1
Query: 361 FQSREPGFLNSLNDQQKNELIQFHLLPTFVSMSNFDTLSNPVRTQAGENPD-RLALNVTS 537
F S + G LNSL+DQQK +L+QFH+LPT ++M F T+SNP+RTQAG+ + + LN+TS
Sbjct: 85 FNSLKSGTLNSLSDQQKVQLVQFHVLPTLITMPQFQTVSNPLRTQAGDGQNGKFPLNITS 144
Query: 538 SGNTVNMT 561
SGN VN+T
Sbjct: 145 SGNQVNIT 152
Score = 48.1 bits (113), Expect = 7e-05
Identities = 28/63 (44%), Positives = 41/63 (64%), Gaps = 1/63 (1%)
Frame = +2
Query: 257 WIRLLQTTQVATQINAQLINSDA-GLTFFAPNDNAFSNLENLGSSTPSTTNRKTSLSNFT 433
+IRLL++TQ + QIN QL +S + GLT FAP DNAF++L++ G+ + +K L F
Sbjct: 50 FIRLLKSTQASDQINTQLNSSSSNGLTVFAPTDNAFNSLKS-GTLNSLSDQQKVQLVQFH 108
Query: 434 CYP 442
P
Sbjct: 109 VLP 111
Score = 33.5 bits (75), Expect(2) = 6e-19
Identities = 18/38 (47%), Positives = 22/38 (57%)
Frame = +3
Query: 138 LMFFFHSTTTLAASSPAPAPSSSPTDIIRILKKAGGYT 251
L FF T +PAP PS PT+I IL+KAG +T
Sbjct: 12 LFIFFLVLATTYGQAPAPGPSG-PTNITAILEKAGQFT 48
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 565,128,868
Number of Sequences: 1393205
Number of extensions: 13757041
Number of successful extensions: 62177
Number of sequences better than 10.0: 266
Number of HSP's better than 10.0 without gapping: 51713
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 60096
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20382500157
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
