Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC012203A_C01 KMC012203A_c01
(546 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_564622.1| expressed protein; protein id: At1g53120.1, sup... 108 3e-23
dbj|BAB56027.1| P0481E12.12 [Oryza sativa (japonica cultivar-gro... 102 2e-21
pir||G96571 hypothetical protein F8L10.3 [imported] - Arabidopsi... 89 3e-17
ref|NP_486930.1| hypothetical protein [Nostoc sp. PCC 7120] gi|2... 81 9e-15
gb|ZP_00107010.1| hypothetical protein [Nostoc punctiforme] 79 5e-14
>ref|NP_564622.1| expressed protein; protein id: At1g53120.1, supported by cDNA:
gi_16648938 [Arabidopsis thaliana]
gi|16648939|gb|AAL24321.1| Unknown protein [Arabidopsis
thaliana] gi|24899783|gb|AAN65106.1| Unknown protein
[Arabidopsis thaliana] gi|27311617|gb|AAO00774.1|
Unknown protein [Arabidopsis thaliana]
Length = 320
Score = 108 bits (271), Expect = 3e-23
Identities = 53/68 (77%), Positives = 60/68 (87%)
Frame = -2
Query: 545 AGFKISRSKLVDMISHGDVRINWISVTTQGTTLKSGDIVSVSGMGRLKIGEINPTKKGKF 366
AGFKISRSKLVD+IS DVR+NW +VT GT +K+GD+VSVSG GRLKIGEIN TKKGKF
Sbjct: 253 AGFKISRSKLVDLISSKDVRVNWATVTKNGTIVKTGDVVSVSGKGRLKIGEINETKKGKF 312
Query: 365 AVELIRYL 342
AVE+IRYL
Sbjct: 313 AVEIIRYL 320
>dbj|BAB56027.1| P0481E12.12 [Oryza sativa (japonica cultivar-group)]
Length = 177
Score = 102 bits (255), Expect = 2e-21
Identities = 50/68 (73%), Positives = 58/68 (84%)
Frame = -2
Query: 545 AGFKISRSKLVDMISHGDVRINWISVTTQGTTLKSGDIVSVSGMGRLKIGEINPTKKGKF 366
AGFKISR+KL +IS GDVR+NW V+ G TLK+GD+VSVSGMGRLKIGEI T+KGK+
Sbjct: 110 AGFKISRTKLASLISAGDVRVNWSPVSKNGVTLKAGDVVSVSGMGRLKIGEIVTTRKGKY 169
Query: 365 AVELIRYL 342
AVELIRYL
Sbjct: 170 AVELIRYL 177
>pir||G96571 hypothetical protein F8L10.3 [imported] - Arabidopsis thaliana
gi|9454543|gb|AAF87866.1|AC022520_10 Unknown protein
[Arabidopsis thaliana]
Length = 773
Score = 89.0 bits (219), Expect = 3e-17
Identities = 43/57 (75%), Positives = 49/57 (85%)
Frame = -2
Query: 545 AGFKISRSKLVDMISHGDVRINWISVTTQGTTLKSGDIVSVSGMGRLKIGEINPTKK 375
AGFKISRSKLVD+IS DVR+NW +VT GT +K+GD+VSVSG GRLKIGEIN TKK
Sbjct: 682 AGFKISRSKLVDLISSKDVRVNWATVTKNGTIVKTGDVVSVSGKGRLKIGEINETKK 738
>ref|NP_486930.1| hypothetical protein [Nostoc sp. PCC 7120] gi|25354847|pir||AC2167
hypothetical protein alr2890 [imported] - Nostoc sp.
(strain PCC 7120) gi|17131984|dbj|BAB74589.1|
ORF_ID:alr2890~hypothetical protein [Nostoc sp. PCC
7120]
Length = 259
Score = 80.9 bits (198), Expect = 9e-15
Identities = 36/68 (52%), Positives = 51/68 (74%)
Frame = -2
Query: 545 AGFKISRSKLVDMISHGDVRINWISVTTQGTTLKSGDIVSVSGMGRLKIGEINPTKKGKF 366
AGF +SRSK+VD I GDVR+NW VT + +KSGD++++ G GRL++GEI TKK ++
Sbjct: 192 AGFGMSRSKMVDFIDSGDVRVNWKEVTQASSQVKSGDLIAIRGKGRLEVGEIAVTKKERY 251
Query: 365 AVELIRYL 342
V+L RY+
Sbjct: 252 RVQLTRYM 259
>gb|ZP_00107010.1| hypothetical protein [Nostoc punctiforme]
Length = 259
Score = 78.6 bits (192), Expect = 5e-14
Identities = 35/68 (51%), Positives = 50/68 (73%)
Frame = -2
Query: 545 AGFKISRSKLVDMISHGDVRINWISVTTQGTTLKSGDIVSVSGMGRLKIGEINPTKKGKF 366
AGF +SRSK+VD I GDVR+NW VT + +KSGD++++ GRL++GEI TKK ++
Sbjct: 192 AGFGMSRSKMVDFIDAGDVRVNWKEVTQASSQVKSGDLIAIRSKGRLEVGEIAVTKKDRY 251
Query: 365 AVELIRYL 342
V+L RY+
Sbjct: 252 RVQLTRYM 259
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 466,377,403
Number of Sequences: 1393205
Number of extensions: 10112052
Number of successful extensions: 30832
Number of sequences better than 10.0: 61
Number of HSP's better than 10.0 without gapping: 29193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30727
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 18660035355
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
