Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC012202A_C01 KMC012202A_c01
(444 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_174074.1| unknown protein; protein id: At1g27540.1 [Arabi... 36 0.094
emb|CAC82374.1| beta 1,6-GlcNAc-transferase [Homo sapiens] 30 5.2
dbj|BAB21531.1| beta-1,3-N-acetylglucosaminyltransferase bGnT-3 ... 30 5.2
ref|NP_055071.1| beta-1,3-N-acetylglucosaminyltransferase bGnT-3... 30 5.2
gb|ZP_00026989.1| hypothetical protein [Ralstonia metallidurans] 30 8.8
>ref|NP_174074.1| unknown protein; protein id: At1g27540.1 [Arabidopsis thaliana]
gi|25403314|pir||E86400 protein T17H3.4 [imported] -
Arabidopsis thaliana gi|5668765|gb|AAD45992.1|AC005916_4
T17H3.4 [Arabidopsis thaliana]
Length = 413
Score = 36.2 bits (82), Expect = 0.094
Identities = 18/37 (48%), Positives = 23/37 (61%)
Frame = -2
Query: 326 PVSRFRLGLYLVRTAKNPLLVLIAGKYGALVYDPVDG 216
PV R L L A +PLL+LIA +YG +Y+P DG
Sbjct: 47 PVKSLRSTLILQPKAGSPLLMLIAEEYGCRIYNPEDG 83
>emb|CAC82374.1| beta 1,6-GlcNAc-transferase [Homo sapiens]
Length = 374
Score = 30.4 bits (67), Expect = 5.2
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 5/34 (14%)
Frame = +2
Query: 197 HTAFLKFRLQDHRPGLHIYLQST-----PARGFW 283
HT + F LQDH PG H+++ P R FW
Sbjct: 218 HTDNMVFYLQDHDPGRHLFVGQLIQNVGPIRAFW 251
>dbj|BAB21531.1| beta-1,3-N-acetylglucosaminyltransferase bGnT-3 [Homo sapiens]
Length = 372
Score = 30.4 bits (67), Expect = 5.2
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 5/34 (14%)
Frame = +2
Query: 197 HTAFLKFRLQDHRPGLHIYLQST-----PARGFW 283
HT + F LQDH PG H+++ P R FW
Sbjct: 216 HTDNMVFYLQDHDPGRHLFVGQLIQNVGPIRAFW 249
>ref|NP_055071.1| beta-1,3-N-acetylglucosaminyltransferase bGnT-3; type II membrane
protein; transmembrane protein 3; core 1 extending
beta-1,3-N-acetylglucosaminyltransferase;
beta-1,3-galactosyltransferase; beta-1,3-galtase 8;
beta3gal-T8; UDP-galactose:beta-N-acetylglucosamine
beta-1,3-galactosyltransferase 8; beta-3-GX-T8 [Homo
sapiens] gi|13123994|sp|Q9Y2A9|B3G8_HUMAN
Beta-1,3-galactosyltransferase 8 (Beta-1,3-GalTase 8)
(Beta3Gal-T8) (b3Gal-T8)
(UDP-galactose:beta-N-acetylglucosamine
beta-1,3-galactosyltransferase 8) (UDP-Gal:beta-GlcNAc
beta-1,3-galactosyltransferase 8) (Beta-3-Gx-T8) (Core 1
extending beta-1,3-N-acetylglucosaminyltransferase)
(Core1-beta3GlcNAcT) gi|4586838|dbj|BAA76497.1| type II
membrane protein [Homo sapiens]
gi|12656365|gb|AAK00849.1|AF293973_1 core 1 extending
beta-1,3-N-acetylglucosaminyltransferase [Homo sapiens]
gi|15028812|emb|CAC45044.1|
beta-1,3-galactosyltransferase [Homo sapiens]
Length = 372
Score = 30.4 bits (67), Expect = 5.2
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 5/34 (14%)
Frame = +2
Query: 197 HTAFLKFRLQDHRPGLHIYLQST-----PARGFW 283
HT + F LQDH PG H+++ P R FW
Sbjct: 216 HTDNMVFYLQDHDPGRHLFVGQLIQNVGPIRAFW 249
>gb|ZP_00026989.1| hypothetical protein [Ralstonia metallidurans]
Length = 275
Score = 29.6 bits (65), Expect = 8.8
Identities = 18/44 (40%), Positives = 21/44 (46%), Gaps = 9/44 (20%)
Frame = +2
Query: 227 DHRPGLHIYL------QSTPARGFWLCEQGISLSGSVI---PEP 331
D +PGL +L Q P WLCE L+GS I PEP
Sbjct: 31 DRKPGLDAFLASYAGMQGNPESPVWLCEATSRLAGSPIAASPEP 74
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 366,287,412
Number of Sequences: 1393205
Number of extensions: 7441002
Number of successful extensions: 14345
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 14132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14342
length of database: 448,689,247
effective HSP length: 123
effective length of database: 277,325,032
effective search space used: 6655800768
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
