Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC012201A_C01 KMC012201A_c01
(624 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_566231.1| expressed protein; protein id: At3g04560.1, sup... 99 4e-20
ref|NP_193881.1| hypothetical protein; protein id: At4g21500.1 [... 56 3e-07
ref|NP_220183.1| (FHA domain; homology to adenylate cyclase) [Ch... 36 0.47
ref|NP_109377.1| homeobox A3 protein isoform a; homeobox protein... 33 2.3
gb|AAH13294.1|AAH13294 Unknown (protein for MGC:3551) [Homo sapi... 33 2.3
>ref|NP_566231.1| expressed protein; protein id: At3g04560.1, supported by cDNA:
gi_15027888, supported by cDNA: gi_20259284 [Arabidopsis
thaliana] gi|6175161|gb|AAF04887.1|AC011437_2 unknown
protein [Arabidopsis thaliana]
gi|15027889|gb|AAK76475.1| unknown protein [Arabidopsis
thaliana] gi|20259285|gb|AAM14378.1| unknown protein
[Arabidopsis thaliana]
Length = 417
Score = 99.0 bits (245), Expect = 4e-20
Identities = 50/74 (67%), Positives = 59/74 (79%)
Frame = -1
Query: 624 NVARFTAHQRDAVGKLWASIRERPTRRKQGKSVNGKLDVNAFAYLQEKYANEKISIRHSL 445
NV+RFT+ QR AV KLWAS+RE+ RRKQGKSV GKLDV AF LQ+KYANEK+SIR S+
Sbjct: 345 NVSRFTSQQRQAVEKLWASVREQHLRRKQGKSVTGKLDVTAFESLQDKYANEKMSIRSSV 404
Query: 444 GGSGDRKATHCAWL 403
G SG+R+A WL
Sbjct: 405 GASGERRAQQ--WL 416
>ref|NP_193881.1| hypothetical protein; protein id: At4g21500.1 [Arabidopsis
thaliana] gi|7459575|pir||T05158 hypothetical protein
F18E5.120 - Arabidopsis thaliana
gi|3080394|emb|CAA18714.1| hypothetical protein
[Arabidopsis thaliana] gi|7268947|emb|CAB81257.1|
hypothetical protein [Arabidopsis thaliana]
Length = 215
Score = 56.2 bits (134), Expect = 3e-07
Identities = 31/71 (43%), Positives = 42/71 (58%), Gaps = 12/71 (16%)
Frame = +3
Query: 6 SSSENGFPATEDWESPENICYRWDEEDR----EGLIEIALDG--------CKRKSEFQFQ 149
SSSE FP DW SPEN+ +RW+E++ EGLIEI LD K + +F +
Sbjct: 145 SSSEFNFPEIGDWNSPENMGFRWEEDEGGIGCEGLIEIKLDHYSHNRKMMSKTEIDFHAE 204
Query: 150 EENMIEIDISP 182
E+ +IEID+ P
Sbjct: 205 EDGLIEIDLFP 215
>ref|NP_220183.1| (FHA domain; homology to adenylate cyclase) [Chlamydia trachomatis]
gi|7468877|pir||D71485 probable adenylate cyclase -
Chlamydia trachomatis (serotype D, strain UW3/Cx)
gi|3329115|gb|AAC68259.1| (FHA domain; homology to
adenylate cyclase) [Chlamydia trachomatis]
Length = 829
Score = 35.8 bits (81), Expect = 0.47
Identities = 20/67 (29%), Positives = 30/67 (43%)
Frame = -1
Query: 210 PRRKVLCASSEKYQSQSCSLPEIETHSSSCNHPKLSQSTLLCLLHPTGSKYSPAIPNPPS 31
P++ S E QSQ+ S+ E T P+LS ++ P + P+ PPS
Sbjct: 213 PKQTTPSGSGEPTQSQNASMEENRTSPDQNQQPQLSSASESGSQSPENQEQQPSQTPPPS 272
Query: 30 PEIHSPT 10
PE P+
Sbjct: 273 PETPEPS 279
>ref|NP_109377.1| homeobox A3 protein isoform a; homeobox protein HOX-A3; homeo box
1E; Hox-1.5-like protein [Homo sapiens]
gi|24497513|ref|NP_705895.1| homeobox A3 protein isoform
a; homeobox protein HOX-A3; homeo box 1E; Hox-1.5-like
protein [Homo sapiens] gi|6016293|sp|O43365|HXA3_HUMAN
Homeobox protein Hox-A3 (Hox-1E)
gi|2822177|gb|AAB97950.1| human HOXA3; 95% similarity to
e307530 (PID:g1888441) [Homo sapiens]
gi|15929500|gb|AAH15180.1|AAH15180 homeo box A3 [Homo
sapiens]
Length = 443
Score = 33.5 bits (75), Expect = 2.3
Identities = 25/87 (28%), Positives = 35/87 (39%), Gaps = 17/87 (19%)
Frame = -1
Query: 222 KKPCPRRKVLCASSEKYQSQSCSLPEIETHSSSCNHPKLSQSTLLCL------------- 82
++P P L A E Y +CSL ++ SS+ HPK + + CL
Sbjct: 30 QQPYPASAALGADGE-YHRPACSL---QSPSSAGGHPKAHELSEACLRTLSAPPSQPPSL 85
Query: 81 ----LHPTGSKYSPAIPNPPSPEIHSP 13
LHP + +P P PP P P
Sbjct: 86 GEPPLHPPPPQAAPPAPQPPQPAPQPP 112
>gb|AAH13294.1|AAH13294 Unknown (protein for MGC:3551) [Homo sapiens]
Length = 310
Score = 33.5 bits (75), Expect = 2.3
Identities = 21/62 (33%), Positives = 29/62 (45%)
Frame = -1
Query: 189 ASSEKYQSQSCSLPEIETHSSSCNHPKLSQSTLLCLLHPTGSKYSPAIPNPPSPEIHSPT 10
A + S S S PE+ + S + NH ST PTG+ +P P S H+PT
Sbjct: 153 APASSPSSLSTSPPEVFSASVTTNHSSTVTST-----QPTGAPTAPESPTEESSSDHTPT 207
Query: 9 SY 4
S+
Sbjct: 208 SH 209
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 569,782,445
Number of Sequences: 1393205
Number of extensions: 13209520
Number of successful extensions: 58716
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 53912
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 58493
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 25301904073
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
