Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC012188A_C01 KMC012188A_c01
(626 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_084835.1| ribosomal protein S3 [Lotus japonicus] gi|27734... 158 6e-38
ref|NP_054537.1| ribosomal protein S3 [Nicotiana tabacum] gi|133... 153 2e-36
ref|NP_783269.1| ribosomal protein S3 [Atropa belladonna] gi|277... 152 3e-36
ref|NP_051096.1| ribosomal protein S3 [Arabidopsis thaliana] gi|... 151 8e-36
ref|NP_054973.1| ribosomal protein S3 [Spinacia oleracea] gi|133... 149 4e-35
>ref|NP_084835.1| ribosomal protein S3 [Lotus japonicus]
gi|27734485|sp|Q9BBP8|RR3_LOTJA Chloroplast 30S
ribosomal protein S3 gi|13359017|dbj|BAB33234.1|
ribosomal protein S3 [Lotus japonicus]
Length = 218
Score = 158 bits (399), Expect = 6e-38
Identities = 78/83 (93%), Positives = 81/83 (96%)
Frame = -1
Query: 626 KNRVSFRKAMKKAIELTEQAGTXGVQVQIAGRIDGKEIARVEWIREGRVPLPTIRAKIDY 447
KNRVSFRKAMKKAIELTEQAGT GVQVQIAGRIDGKEIARVEWIREGRVPL TIRAKIDY
Sbjct: 136 KNRVSFRKAMKKAIELTEQAGTKGVQVQIAGRIDGKEIARVEWIREGRVPLQTIRAKIDY 195
Query: 446 CSYTVRTIYGVLGIQLWIFLNQE 378
CSYTVRTIYGVLGI++WIFLN+E
Sbjct: 196 CSYTVRTIYGVLGIKVWIFLNKE 218
>ref|NP_054537.1| ribosomal protein S3 [Nicotiana tabacum]
gi|133939|sp|P06357|RR3_TOBAC Chloroplast 30S ribosomal
protein S3 gi|70865|pir||R3NT3 ribosomal protein S3,
chloroplast - common tobacco chloroplast
gi|11865|emb|CAA77381.1| ribosomal protein S3 [Nicotiana
tabacum] gi|225235|prf||1211235BT ribosomal protein S3
Length = 218
Score = 153 bits (387), Expect = 2e-36
Identities = 74/83 (89%), Positives = 80/83 (96%)
Frame = -1
Query: 626 KNRVSFRKAMKKAIELTEQAGTXGVQVQIAGRIDGKEIARVEWIREGRVPLPTIRAKIDY 447
KNRVSFRKAMKKAIELTEQA T G+Q+QIAGRIDGKEIARVEWIREGRVPL TIRAKIDY
Sbjct: 136 KNRVSFRKAMKKAIELTEQADTKGIQIQIAGRIDGKEIARVEWIREGRVPLQTIRAKIDY 195
Query: 446 CSYTVRTIYGVLGIQLWIFLNQE 378
CSYTVRTIYGVLGI++WIFL++E
Sbjct: 196 CSYTVRTIYGVLGIKIWIFLDEE 218
>ref|NP_783269.1| ribosomal protein S3 [Atropa belladonna]
gi|27734482|sp|Q8S8V5|RR3_ATRBE Chloroplast 30S
ribosomal protein S3 gi|20068369|emb|CAC88082.1|
ribosomal protein S3 [Atropa belladonna]
Length = 218
Score = 152 bits (384), Expect = 3e-36
Identities = 73/83 (87%), Positives = 80/83 (95%)
Frame = -1
Query: 626 KNRVSFRKAMKKAIELTEQAGTXGVQVQIAGRIDGKEIARVEWIREGRVPLPTIRAKIDY 447
KNRVSFRKAMKKAIELTEQA T G+Q+QIAGRIDGKEIARVEWIREGRVPL TIRAKIDY
Sbjct: 136 KNRVSFRKAMKKAIELTEQADTKGIQIQIAGRIDGKEIARVEWIREGRVPLQTIRAKIDY 195
Query: 446 CSYTVRTIYGVLGIQLWIFLNQE 378
C+YTVRTIYGVLGI++WIFL++E
Sbjct: 196 CAYTVRTIYGVLGIKIWIFLDEE 218
>ref|NP_051096.1| ribosomal protein S3 [Arabidopsis thaliana]
gi|6685913|sp|P56798|RR3_ARATH Chloroplast 30S ribosomal
protein S3 gi|5881732|dbj|BAA84423.1| ribosomal protein
S3 [Arabidopsis thaliana]
Length = 218
Score = 151 bits (381), Expect = 8e-36
Identities = 73/83 (87%), Positives = 79/83 (94%)
Frame = -1
Query: 626 KNRVSFRKAMKKAIELTEQAGTXGVQVQIAGRIDGKEIARVEWIREGRVPLPTIRAKIDY 447
KNRVSFRKAMKKAIELTEQA T G+QVQIAGRIDGKEIARVEWIREGRVPL TI AKIDY
Sbjct: 136 KNRVSFRKAMKKAIELTEQANTKGIQVQIAGRIDGKEIARVEWIREGRVPLQTIEAKIDY 195
Query: 446 CSYTVRTIYGVLGIQLWIFLNQE 378
CSYTVRTIYGVLGI++WIF+++E
Sbjct: 196 CSYTVRTIYGVLGIKIWIFVDEE 218
>ref|NP_054973.1| ribosomal protein S3 [Spinacia oleracea]
gi|133938|sp|P09595|RR3_SPIOL Chloroplast 30S ribosomal
protein S3 gi|70866|pir||R3SP3 ribosomal protein S3,
chloroplast - spinach chloroplast
gi|12310|emb|CAA31715.1| ribosomal protein S3 [Spinacia
oleracea] gi|7636146|emb|CAB88766.1| ribosomal protein
S3 [Spinacia oleracea]
Length = 218
Score = 149 bits (375), Expect = 4e-35
Identities = 70/83 (84%), Positives = 79/83 (94%)
Frame = -1
Query: 626 KNRVSFRKAMKKAIELTEQAGTXGVQVQIAGRIDGKEIARVEWIREGRVPLPTIRAKIDY 447
K+RVSFRKAMKKAIELTEQA T G+Q+QIAGRIDGKEIAR+EWIREGRVPL TIRAKIDY
Sbjct: 136 KSRVSFRKAMKKAIELTEQADTKGIQIQIAGRIDGKEIARIEWIREGRVPLQTIRAKIDY 195
Query: 446 CSYTVRTIYGVLGIQLWIFLNQE 378
C+YTVRTIYGVLGI++WIF+ +E
Sbjct: 196 CAYTVRTIYGVLGIKIWIFMGEE 218
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 493,248,839
Number of Sequences: 1393205
Number of extensions: 10271594
Number of successful extensions: 27601
Number of sequences better than 10.0: 231
Number of HSP's better than 10.0 without gapping: 26608
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27575
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 25586195130
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
