Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC012179A_C01 KMC012179A_c01
(547 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_189030.1| F-box protein family; protein id: At3g23880.1 [... 41 0.011
ref|NP_566322.1| F-box protein family; protein id: At3g07870.1, ... 40 0.014
ref|NP_192993.1| F-box protein family; protein id: At4g12560.1 [... 39 0.031
ref|NP_566277.1| F-box protein family; protein id: At3g06240.1, ... 38 0.069
dbj|BAC42921.1| unknown protein [Arabidopsis thaliana] 38 0.069
>ref|NP_189030.1| F-box protein family; protein id: At3g23880.1 [Arabidopsis
thaliana] gi|9294656|dbj|BAB03005.1|
gb|AAF30317.1~gene_id:F14O13.6~similar to unknown
protein [Arabidopsis thaliana]
gi|26449693|dbj|BAC41970.1| unknown protein [Arabidopsis
thaliana]
Length = 364
Score = 40.8 bits (94), Expect = 0.011
Identities = 32/100 (32%), Positives = 49/100 (49%), Gaps = 1/100 (1%)
Frame = -1
Query: 544 LRDCLSMLSGNYQV-CDVWLMKEYGNQQSWTKLFSVAKQLFHHQVFDTLHIFEEDQLLLV 368
LR CLSM+ DVW+MKE+G SW+KL S+ L I + +LL
Sbjct: 266 LRGCLSMVCYCKGANADVWVMKEFGEVYSWSKLLSIPGLT---DFVRPLWISDGLVVLLE 322
Query: 367 CGSKLYLYHPRDNTLKTHQIQNITGWVVPGVYVESLISPS 248
S L LY+ + +I+G VY+++++SP+
Sbjct: 323 FRSGLALYNCSNGRFHYPVSNSISGCRDAKVYLKTMVSPN 362
>ref|NP_566322.1| F-box protein family; protein id: At3g07870.1, supported by cDNA:
gi_15983478 [Arabidopsis thaliana]
gi|6648199|gb|AAF21197.1|AC013483_21 unknown protein
[Arabidopsis thaliana]
gi|15983479|gb|AAL11607.1|AF424614_1 AT3g07870/F17A17_21
[Arabidopsis thaliana]
Length = 417
Score = 40.4 bits (93), Expect = 0.014
Identities = 30/115 (26%), Positives = 50/115 (43%), Gaps = 20/115 (17%)
Frame = -1
Query: 544 LRDCL-SMLSGNYQVCDVWLMKEYGNQQSWTKLFSVA------------------KQLFH 422
L+ CL +++ GNY D+W+MK YG ++SW K +S+ K +
Sbjct: 293 LKGCLCAVVYGNYGKLDIWVMKTYGVKESWGKEYSIGTYLPKGLKQNLDRPMWIWKNAEN 352
Query: 421 HQVFDTLHIFEEDQLLLVCGSK-LYLYHPRDNTLKTHQIQNITGWVVPGVYVESL 260
+V L + E ++LL S+ L Y P+ K + W V+ +L
Sbjct: 353 GKVVRVLCLLENGEILLEYKSRVLVAYDPKLGKFKDLLFHGLPNWFHTVVHAGTL 407
>ref|NP_192993.1| F-box protein family; protein id: At4g12560.1 [Arabidopsis
thaliana] gi|7487230|pir||T07648 hypothetical protein
T1P17.150 - Arabidopsis thaliana
gi|4725955|emb|CAB41726.1| putative protein [Arabidopsis
thaliana] gi|7267958|emb|CAB78299.1| putative protein
[Arabidopsis thaliana]
Length = 408
Score = 39.3 bits (90), Expect = 0.031
Identities = 19/39 (48%), Positives = 25/39 (63%), Gaps = 1/39 (2%)
Frame = -1
Query: 547 VLRDCLSMLSGNYQ-VCDVWLMKEYGNQQSWTKLFSVAK 434
VL CL ++ Q DVW+MKEY + SWTK+F+V K
Sbjct: 267 VLDGCLCLMCNYDQSYVDVWMMKEYNVRDSWTKVFTVQK 305
>ref|NP_566277.1| F-box protein family; protein id: At3g06240.1, supported by cDNA:
108003. [Arabidopsis thaliana]
gi|6862928|gb|AAF30317.1|AC018907_17 hypothetical
protein [Arabidopsis thaliana]
gi|21536665|gb|AAM60997.1| unknown [Arabidopsis
thaliana]
Length = 416
Score = 38.1 bits (87), Expect = 0.069
Identities = 24/86 (27%), Positives = 40/86 (45%), Gaps = 2/86 (2%)
Frame = -1
Query: 499 DVWLMKEYGNQQSWTKLFSVAKQLFHHQVFDTLHIFEEDQLLLVCGSKLYLYHPRDNTLK 320
D+W+M EYG +SW++ + L + + ++++LL L LY+ N
Sbjct: 328 DIWVMSEYGEAKSWSR---IRINLLYRSMKPLCSTKNDEEVLLELDGDLVLYNFETNASS 384
Query: 319 THQI--QNITGWVVPGVYVESLISPS 248
I ++ YVESLISP+
Sbjct: 385 NLGICGVKLSDGFEANTYVESLISPN 410
>dbj|BAC42921.1| unknown protein [Arabidopsis thaliana]
Length = 427
Score = 38.1 bits (87), Expect = 0.069
Identities = 24/86 (27%), Positives = 40/86 (45%), Gaps = 2/86 (2%)
Frame = -1
Query: 499 DVWLMKEYGNQQSWTKLFSVAKQLFHHQVFDTLHIFEEDQLLLVCGSKLYLYHPRDNTLK 320
D+W+M EYG +SW++ + L + + ++++LL L LY+ N
Sbjct: 339 DIWVMSEYGEAKSWSR---IRINLLYRSMKPLCSTKNDEEVLLELDGDLVLYNFETNASS 395
Query: 319 THQI--QNITGWVVPGVYVESLISPS 248
I ++ YVESLISP+
Sbjct: 396 NLGICGVKLSDGFEANTYVESLISPN 421
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 508,897,396
Number of Sequences: 1393205
Number of extensions: 11323872
Number of successful extensions: 25108
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 24211
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25076
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 18660035355
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
