Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC012177A_C01 KMC012177A_c01
(869 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAN41297.1| unknown protein [Arabidopsis thaliana] 160 3e-38
gb|AAK93649.2| unknown protein [Arabidopsis thaliana] 160 3e-38
ref|NP_030605.1| expressed protein; protein id: At2g40600.1, sup... 160 3e-38
ref|NP_799613.1| hypothetical protein [Vibrio parahaemolyticus R... 84 1e-33
ref|NP_518455.1| CONSERVED HYPOTHETICAL PROTEIN [Ralstonia solan... 89 3e-31
>gb|AAN41297.1| unknown protein [Arabidopsis thaliana]
Length = 257
Score = 160 bits (404), Expect = 3e-38
Identities = 73/112 (65%), Positives = 90/112 (80%)
Frame = -3
Query: 552 P*GKRGSRPGFRLPVSHVVHTVGPIYHSNSDPATSLASAYRNSLRVAKEKNIQYIAFPAI 373
P G+ PGF LP S V+HTVGPIY S+ +P SL ++Y+NSLRVAKE NI+YIAFPAI
Sbjct: 144 PTGEARITPGFNLPASRVIHTVGPIYDSDVNPQESLTNSYKNSLRVAKENNIKYIAFPAI 203
Query: 372 SCGVYGYPYDEAATVAISTIKEFQNDFKEVHFVLFLRDIYEVWLNKANDLLK 217
SCG+YGYP+DEAA + ISTIK+F DFKEVHFVLF DI+ VW+NKA ++L+
Sbjct: 204 SCGIYGYPFDEAAAIGISTIKQFSTDFKEVHFVLFADDIFSVWVNKAKEVLQ 255
Score = 132 bits (333), Expect = 5e-30
Identities = 65/89 (73%), Positives = 73/89 (81%)
Frame = -2
Query: 787 ASSNGAVRFPLSPTTALIIQEGDISQWSIDSSSDAIVNPANERMLGGGGADGAIHRAAGP 608
AS + F LS ++ L I +GDI++WS+DSSSDAIVNPANERMLGGGGADGAIHRAAGP
Sbjct: 66 ASGDEGAVFNLSDSSLLKILKGDITKWSVDSSSDAIVNPANERMLGGGGADGAIHRAAGP 125
Query: 607 ELLQACYSVPEVRRGVRCPVGEARITTGF 521
+L ACY VPEVR GVRCP GEARIT GF
Sbjct: 126 QLRAACYEVPEVRPGVRCPTGEARITPGF 154
>gb|AAK93649.2| unknown protein [Arabidopsis thaliana]
Length = 239
Score = 160 bits (404), Expect = 3e-38
Identities = 73/112 (65%), Positives = 90/112 (80%)
Frame = -3
Query: 552 P*GKRGSRPGFRLPVSHVVHTVGPIYHSNSDPATSLASAYRNSLRVAKEKNIQYIAFPAI 373
P G+ PGF LP S V+HTVGPIY S+ +P SL ++Y+NSLRVAKE NI+YIAFPAI
Sbjct: 126 PTGEARITPGFNLPASRVIHTVGPIYDSDVNPQESLTNSYKNSLRVAKENNIKYIAFPAI 185
Query: 372 SCGVYGYPYDEAATVAISTIKEFQNDFKEVHFVLFLRDIYEVWLNKANDLLK 217
SCG+YGYP+DEAA + ISTIK+F DFKEVHFVLF DI+ VW+NKA ++L+
Sbjct: 186 SCGIYGYPFDEAAAIGISTIKQFSTDFKEVHFVLFADDIFSVWVNKAKEVLQ 237
Score = 129 bits (325), Expect = 4e-29
Identities = 64/89 (71%), Positives = 72/89 (79%)
Frame = -2
Query: 787 ASSNGAVRFPLSPTTALIIQEGDISQWSIDSSSDAIVNPANERMLGGGGADGAIHRAAGP 608
AS + F LS ++ L I +GDI++WS+DSSSDAIVNPANERMLGGGGADGAIHRAAGP
Sbjct: 48 ASGDEGAVFNLSDSSLLKILKGDITKWSVDSSSDAIVNPANERMLGGGGADGAIHRAAGP 107
Query: 607 ELLQACYSVPEVRRGVRCPVGEARITTGF 521
+L ACY VPEVR VRCP GEARIT GF
Sbjct: 108 QLRAACYEVPEVRPRVRCPTGEARITPGF 136
>ref|NP_030605.1| expressed protein; protein id: At2g40600.1, supported by cDNA:
gi_15293076 [Arabidopsis thaliana]
gi|20196872|gb|AAB87596.2| expressed protein
[Arabidopsis thaliana]
Length = 193
Score = 160 bits (404), Expect = 3e-38
Identities = 73/112 (65%), Positives = 90/112 (80%)
Frame = -3
Query: 552 P*GKRGSRPGFRLPVSHVVHTVGPIYHSNSDPATSLASAYRNSLRVAKEKNIQYIAFPAI 373
P G+ PGF LP S V+HTVGPIY S+ +P SL ++Y+NSLRVAKE NI+YIAFPAI
Sbjct: 80 PTGEARITPGFNLPASRVIHTVGPIYDSDVNPQESLTNSYKNSLRVAKENNIKYIAFPAI 139
Query: 372 SCGVYGYPYDEAATVAISTIKEFQNDFKEVHFVLFLRDIYEVWLNKANDLLK 217
SCG+YGYP+DEAA + ISTIK+F DFKEVHFVLF DI+ VW+NKA ++L+
Sbjct: 140 SCGIYGYPFDEAAAIGISTIKQFSTDFKEVHFVLFADDIFSVWVNKAKEVLQ 191
Score = 132 bits (333), Expect = 5e-30
Identities = 65/89 (73%), Positives = 73/89 (81%)
Frame = -2
Query: 787 ASSNGAVRFPLSPTTALIIQEGDISQWSIDSSSDAIVNPANERMLGGGGADGAIHRAAGP 608
AS + F LS ++ L I +GDI++WS+DSSSDAIVNPANERMLGGGGADGAIHRAAGP
Sbjct: 2 ASGDEGAVFNLSDSSLLKILKGDITKWSVDSSSDAIVNPANERMLGGGGADGAIHRAAGP 61
Query: 607 ELLQACYSVPEVRRGVRCPVGEARITTGF 521
+L ACY VPEVR GVRCP GEARIT GF
Sbjct: 62 QLRAACYEVPEVRPGVRCPTGEARITPGF 90
>ref|NP_799613.1| hypothetical protein [Vibrio parahaemolyticus RIMD 2210633]
gi|28808241|dbj|BAC61446.1| hypothetical protein [Vibrio
parahaemolyticus]
Length = 170
Score = 84.0 bits (206), Expect(2) = 1e-33
Identities = 43/71 (60%), Positives = 53/71 (74%)
Frame = -2
Query: 742 ALIIQEGDISQWSIDSSSDAIVNPANERMLGGGGADGAIHRAAGPELLQACYSVPEVRRG 563
A+ + +GDI+ +D AIVN AN RMLGGGG DGAIHRAAGP L+ ACY+V +V G
Sbjct: 3 AISLVQGDITTAHVD----AIVNAANPRMLGGGGVDGAIHRAAGPALINACYAVDDV-DG 57
Query: 562 VRCPVGEARIT 530
+RCP G+ARIT
Sbjct: 58 IRCPFGDARIT 68
Score = 82.0 bits (201), Expect(2) = 1e-33
Identities = 40/91 (43%), Positives = 56/91 (60%)
Frame = -3
Query: 516 LPVSHVVHTVGPIYHSNSDPATSLASAYRNSLRVAKEKNIQYIAFPAISCGVYGYPYDEA 337
L +V+H VGPIY +DP T L SAY+ SL +A + Q +A PAISCGVYGYP EA
Sbjct: 73 LNARYVIHAVGPIYDKFADPKTVLESAYQRSLDLALANHCQSVALPAISCGVYGYPPQEA 132
Query: 336 ATVAISTIKEFQNDFKEVHFVLFLRDIYEVW 244
A VA++ + + ++ F LF ++ +W
Sbjct: 133 AEVAMAVCQRPEYAALDMRFYLFSEEMLSIW 163
>ref|NP_518455.1| CONSERVED HYPOTHETICAL PROTEIN [Ralstonia solanacearum]
gi|20178146|sp|Q8Y2K1|Y334_RALSO Hypothetical protein
RSc0334 gi|17427343|emb|CAD13862.1| CONSERVED
HYPOTHETICAL PROTEIN [Ralstonia solanacearum]
Length = 171
Score = 89.4 bits (220), Expect(2) = 3e-31
Identities = 47/109 (43%), Positives = 67/109 (61%), Gaps = 4/109 (3%)
Frame = -3
Query: 546 GKRGSRPGFRLPVSHVVHTVGPIYHSN-SDPATSLASAYRNSLRVAKEKNIQYIAFPAIS 370
G+ PGF LP +++HTVGPI+ D A LA+ YRNSL +AK+ +++ IAFP IS
Sbjct: 62 GQAKITPGFLLPARYIIHTVGPIWRGGRQDEAALLAACYRNSLALAKQHDVRTIAFPCIS 121
Query: 369 CGVYGYPYDEAATVAISTIKEFQNDFKEVHFVLFLR---DIYEVWLNKA 232
GVYG+P AA +A+ T++E D ++ F F +YE LN+A
Sbjct: 122 TGVYGFPPQLAAPIAVRTVREHGADLDDIVFCCFSAADLALYETALNEA 170
Score = 68.9 bits (167), Expect(2) = 3e-31
Identities = 39/77 (50%), Positives = 47/77 (60%)
Frame = -2
Query: 751 PTTALIIQEGDISQWSIDSSSDAIVNPANERMLGGGGADGAIHRAAGPELLQACYSVPEV 572
PT L DI+ + D AIVN AN +LGGGG DGAIHRAAGPELL+AC ++
Sbjct: 4 PTVTLRALRADITTLACD----AIVNAANSALLGGGGVDGAIHRAAGPELLEACRALH-- 57
Query: 571 RRGVRCPVGEARITTGF 521
C G+A+IT GF
Sbjct: 58 ----GCRTGQAKITPGF 70
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 751,889,874
Number of Sequences: 1393205
Number of extensions: 16866118
Number of successful extensions: 47393
Number of sequences better than 10.0: 220
Number of HSP's better than 10.0 without gapping: 44472
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 47187
length of database: 448,689,247
effective HSP length: 122
effective length of database: 278,718,237
effective search space used: 46545945579
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
