Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC012168A_C01 KMC012168A_c01
(944 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_171777.1| ribosomal protein L19, putative; protein id: At... 300 2e-80
gb|AAL58923.1|AF462835_1 At1g02780/T14P4_3 [Arabidopsis thaliana] 300 3e-80
ref|NP_192132.1| putative ribosomal protein L19; protein id: At4... 292 6e-78
ref|NP_188300.1| putative ribosomal protein; protein id: At3g167... 288 1e-76
pir||T01426 ribosomal protein L19.T2H3.3 - Arabidopsis thaliana ... 287 2e-76
>ref|NP_171777.1| ribosomal protein L19, putative; protein id: At1g02780.1, supported
by cDNA: 2906., supported by cDNA: gi_15983411,
supported by cDNA: gi_18087584 [Arabidopsis thaliana]
gi|20143885|sp|Q9SRX2|R19A_ARATH 60S ribosomal protein
L19-1 gi|25295343|pir||G86157 probable ribosomal protein
L19 [imported] - Arabidopsis thaliana
gi|6056425|gb|AAF02889.1|AC009525_23 Putative ribosomal
protein L19 [Arabidopsis thaliana]
gi|15983412|gb|AAL11574.1|AF424580_1 At1g02780/T14P4_3
[Arabidopsis thaliana]
Length = 214
Score = 300 bits (769), Expect = 2e-80
Identities = 163/220 (74%), Positives = 177/220 (80%), Gaps = 9/220 (4%)
Frame = -1
Query: 920 MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSR 741
MVSLKLQKRL+ASV+KCG+GKVWLDPNE ++ISMANSRQNIRKLVKDGFIIRKPTKIHSR
Sbjct: 1 MVSLKLQKRLAASVMKCGKGKVWLDPNESSDISMANSRQNIRKLVKDGFIIRKPTKIHSR 60
Query: 740 SRARRMKEAKRKGTSLWIR*AQGYQRGKASHQ-----RSFGCGGMRVLRRLLRKYREAKK 576
SRAR+MK AK KG GY + K + + + MRVLRRLL+KYRE KK
Sbjct: 61 SRARKMKIAKMKGRH------SGYGKRKGTREARLPTKVLWMRRMRVLRRLLKKYRETKK 114
Query: 575 IDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKN 396
IDKHMYHDMYM+VKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERK+
Sbjct: 115 IDKHMYHDMYMRVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKH 174
Query: 395 ARREERLAQGPGEKAAPAAPAATAAQPAQAT----KKSKK 288
ARREERLA+GPG AP A A AA PA KKSKK
Sbjct: 175 ARREERLAKGPGGDVAPVAAPAPAATPAPTAAVPKKKSKK 214
>gb|AAL58923.1|AF462835_1 At1g02780/T14P4_3 [Arabidopsis thaliana]
Length = 214
Score = 300 bits (767), Expect = 3e-80
Identities = 163/220 (74%), Positives = 177/220 (80%), Gaps = 9/220 (4%)
Frame = -1
Query: 920 MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSR 741
MVSLKLQKRL+ASV+KCG+GKVWLDPNE ++ISMANSRQNIRKLVKDGFIIRKPTKIHSR
Sbjct: 1 MVSLKLQKRLAASVMKCGKGKVWLDPNESSDISMANSRQNIRKLVKDGFIIRKPTKIHSR 60
Query: 740 SRARRMKEAKRKGTSLWIR*AQGYQRGKASHQ-----RSFGCGGMRVLRRLLRKYREAKK 576
SRAR+MK AK KG GY + KA+ + + MRVLRRLL+KYRE KK
Sbjct: 61 SRARKMKIAKMKGRH------SGYGKRKATREARLPTKVLWMRRMRVLRRLLKKYRETKK 114
Query: 575 IDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKN 396
IDKHMYHDMYM+VKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERK+
Sbjct: 115 IDKHMYHDMYMRVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKH 174
Query: 395 ARREERLAQGPGEKAAPAAPAATAAQPAQAT----KKSKK 288
ARREERLA+ PG AP A A AA PA KKSKK
Sbjct: 175 ARREERLAKSPGGDVAPVAAPAPAATPAPTAAVPKKKSKK 214
>ref|NP_192132.1| putative ribosomal protein L19; protein id: At4g02230.1, supported
by cDNA: gi_14423511, supported by cDNA: gi_18377485
[Arabidopsis thaliana] gi|19924280|sp|P49693|R19C_ARATH
60S ribosomal protein L19-3 gi|25295341|pir||E85028
probable ribosomal protein L19 [imported] - Arabidopsis
thaliana gi|7268983|emb|CAB80716.1| putative ribosomal
protein L19 [Arabidopsis thaliana]
gi|14423512|gb|AAK62438.1|AF386993_1 Similar to 60S
ribosome protein L19 [Arabidopsis thaliana]
gi|18377486|gb|AAL66909.1| similar to 60S ribosome
protein L19 [Arabidopsis thaliana]
Length = 208
Score = 292 bits (747), Expect = 6e-78
Identities = 158/214 (73%), Positives = 176/214 (81%), Gaps = 6/214 (2%)
Frame = -1
Query: 920 MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSR 741
MVSLKLQKRL++SVLKCG+ KVWLDPNE ++ISMANSRQNIRKLVKDGFIIRKPTKIHSR
Sbjct: 1 MVSLKLQKRLASSVLKCGKRKVWLDPNEGSDISMANSRQNIRKLVKDGFIIRKPTKIHSR 60
Query: 740 SRARRMKEAKRKGTSLWIR*AQGYQRGKASHQ-----RSFGCGGMRVLRRLLRKYREAKK 576
SRAR++ AKRKG GY + K + + + MRVLRRLL+KYRE KK
Sbjct: 61 SRARQLNIAKRKGRH------SGYGKRKGTREARLPTKVLWMRRMRVLRRLLKKYRETKK 114
Query: 575 IDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKN 396
ID+HMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERK+
Sbjct: 115 IDRHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKH 174
Query: 395 ARREERLAQGP-GEKAAPAAPAATAAQPAQATKK 297
ARREERLA+GP G+ A A PA TA PA+ +KK
Sbjct: 175 ARREERLAKGPGGDIPAAAPPAQTAEVPAKKSKK 208
>ref|NP_188300.1| putative ribosomal protein; protein id: At3g16780.1, supported by
cDNA: 27978., supported by cDNA: gi_15010617, supported
by cDNA: gi_19699259 [Arabidopsis thaliana]
gi|17865565|sp|Q9LUQ6|R19B_ARATH 60S ribosomal protein
L19-2 gi|11994633|dbj|BAB02770.1| 60S ribosome protein
L19-like [Arabidopsis thaliana]
gi|15010618|gb|AAK73968.1| AT3g16780/MGL6_23
[Arabidopsis thaliana] gi|19699260|gb|AAL90996.1|
AT3g16780/MGL6_23 [Arabidopsis thaliana]
Length = 209
Score = 288 bits (736), Expect = 1e-76
Identities = 155/216 (71%), Positives = 168/216 (77%), Gaps = 5/216 (2%)
Frame = -1
Query: 920 MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSR 741
MVSLK+QKRL+ASV+KCG+GKVWLDPNE +ISMANSRQNIRKLVKDGFIIRKPTKIHSR
Sbjct: 1 MVSLKIQKRLAASVMKCGKGKVWLDPNESGDISMANSRQNIRKLVKDGFIIRKPTKIHSR 60
Query: 740 SRARRMKEAKRKGTSLWIR*AQGYQRGKASHQ-----RSFGCGGMRVLRRLLRKYREAKK 576
SRAR + EAKRKG GY + K + + + MRVLRR L KYRE+KK
Sbjct: 61 SRARALNEAKRKGRH------SGYGKRKGTREARLPTKILWMRRMRVLRRFLSKYRESKK 114
Query: 575 IDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKN 396
ID+HMYHDMYMKVKGNVFKNKRVLMESIHK KAEKAREKTL+DQFEAKR KNKASRERK
Sbjct: 115 IDRHMYHDMYMKVKGNVFKNKRVLMESIHKMKAEKAREKTLADQFEAKRIKNKASRERKF 174
Query: 395 ARREERLAQGPGEKAAPAAPAATAAQPAQATKKSKK 288
ARREERLAQGPG PA QP KKSKK
Sbjct: 175 ARREERLAQGPG-GGETTTPAGAPQQPEVTKKKSKK 209
>pir||T01426 ribosomal protein L19.T2H3.3 - Arabidopsis thaliana
gi|3377797|gb|AAC28170.1| Similar to 60S ribosome
protein L19; coded for by A. thaliana cDNA T04719; coded
for by A. thaliana cDNA H36046; coded for by A. thaliana
cDNA T44067; coded for by A. thaliana cDNA T14056; coded
for by A. thaliana cDNA R90691 [Arabidopsis thaliana]
Length = 200
Score = 287 bits (734), Expect = 2e-76
Identities = 153/206 (74%), Positives = 169/206 (81%), Gaps = 5/206 (2%)
Frame = -1
Query: 920 MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSR 741
MVSLKLQKRL++SVLKCG+ KVWLDPNE ++ISMANSRQNIRKLVKDGFIIRKPTKIHSR
Sbjct: 1 MVSLKLQKRLASSVLKCGKRKVWLDPNEGSDISMANSRQNIRKLVKDGFIIRKPTKIHSR 60
Query: 740 SRARRMKEAKRKGTSLWIR*AQGYQRGKASHQ-----RSFGCGGMRVLRRLLRKYREAKK 576
SRAR++ AKRKG GY + K + + + MRVLRRLL+KYRE KK
Sbjct: 61 SRARQLNIAKRKGRH------SGYGKRKGTREARLPTKVLWMRRMRVLRRLLKKYRETKK 114
Query: 575 IDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKN 396
ID+HMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERK+
Sbjct: 115 IDRHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKH 174
Query: 395 ARREERLAQGPGEKAAPAAPAATAAQ 318
ARREERLA+GPG AAP A A+
Sbjct: 175 ARREERLAKGPGGDIPAAAPPAQTAE 200
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 816,704,771
Number of Sequences: 1393205
Number of extensions: 18545858
Number of successful extensions: 79725
Number of sequences better than 10.0: 390
Number of HSP's better than 10.0 without gapping: 69583
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78678
length of database: 448,689,247
effective HSP length: 123
effective length of database: 277,325,032
effective search space used: 52969081112
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
