Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC012166A_C01 KMC012166A_c01
(621 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM63275.1| putative proline transporter [Arabidopsis thaliana] 227 1e-58
dbj|BAB93109.1| betaine/proline transporter [Avicennia marina] 226 2e-58
gb|AAM65420.1| proline transporter 1 [Arabidopsis thaliana] 224 7e-58
ref|NP_181518.1| proline transporter 1; protein id: At2g39890.1,... 224 7e-58
gb|AAF76897.1|AF274032_1 proline/glycine betaine transporter [At... 223 2e-57
>gb|AAM63275.1| putative proline transporter [Arabidopsis thaliana]
Length = 436
Score = 227 bits (578), Expect = 1e-58
Identities = 104/145 (71%), Positives = 129/145 (88%)
Frame = -2
Query: 620 VWVKAVPNITAFLQAVIALHIFASPMYEYLDTKFGIKGSAMKVKNLSFRITVRGGYLAFN 441
+WVKA+ NI+A LQ+VI+LHIFASP YEY+DTKFGIKG+ + +KNL FRI RGGY+A +
Sbjct: 292 LWVKALANISAILQSVISLHIFASPTYEYMDTKFGIKGNPLALKNLLFRIMARGGYIAVS 351
Query: 440 TFVSALLPFLGDFMSLTGAISTFPLTFILANHMYLEAKKDKLTNFQKLWHWINIIFFSLM 261
T +SALLPFLGDFMSLTGA+STFPLTFILANHMY +AK +KL+ QKLWHW+N++FFSLM
Sbjct: 352 TLLSALLPFLGDFMSLTGAVSTFPLTFILANHMYYKAKNNKLSTLQKLWHWLNVVFFSLM 411
Query: 260 SVAATVSALRLISVDSKTYHIFADL 186
SVAA ++ALRLI++DSK +H+FADL
Sbjct: 412 SVAAAIAALRLIAIDSKNFHVFADL 436
>dbj|BAB93109.1| betaine/proline transporter [Avicennia marina]
Length = 447
Score = 226 bits (576), Expect = 2e-58
Identities = 105/145 (72%), Positives = 129/145 (88%)
Frame = -2
Query: 620 VWVKAVPNITAFLQAVIALHIFASPMYEYLDTKFGIKGSAMKVKNLSFRITVRGGYLAFN 441
+W+K NI+AFLQ+VIALHIFASPMYE+LDTK+GIKGSA+ V+NLSFRI VRGGY+A
Sbjct: 303 IWLKTTTNISAFLQSVIALHIFASPMYEFLDTKYGIKGSALAVRNLSFRILVRGGYVAMT 362
Query: 440 TFVSALLPFLGDFMSLTGAISTFPLTFILANHMYLEAKKDKLTNFQKLWHWINIIFFSLM 261
+ VSALLPFLGDFMSLTGA+STFPLTFILANHMYL A ++K++ QK WHW+N++ FS M
Sbjct: 363 SLVSALLPFLGDFMSLTGALSTFPLTFILANHMYLVANRNKMSLLQKNWHWLNVVLFSCM 422
Query: 260 SVAATVSALRLISVDSKTYHIFADL 186
+VAA V+ALRLI+VDS+TYH+FAD+
Sbjct: 423 AVAAAVAALRLIAVDSRTYHVFADI 447
>gb|AAM65420.1| proline transporter 1 [Arabidopsis thaliana]
Length = 442
Score = 224 bits (571), Expect = 7e-58
Identities = 102/145 (70%), Positives = 127/145 (87%)
Frame = -2
Query: 620 VWVKAVPNITAFLQAVIALHIFASPMYEYLDTKFGIKGSAMKVKNLSFRITVRGGYLAFN 441
+WVKA+ N++A LQ+VI+LHIFASP YEY+DTK+GIKG+ +KNL FRI RGGY+A +
Sbjct: 298 LWVKALANVSAILQSVISLHIFASPTYEYMDTKYGIKGNPFAIKNLLFRIMARGGYIAVS 357
Query: 440 TFVSALLPFLGDFMSLTGAISTFPLTFILANHMYLEAKKDKLTNFQKLWHWINIIFFSLM 261
T +SALLPFLGDFMSLTGA+STFPLTFILANHMY +AK +KL QKLWHW+N++FFSLM
Sbjct: 358 TLISALLPFLGDFMSLTGAVSTFPLTFILANHMYYKAKNNKLNAMQKLWHWLNVVFFSLM 417
Query: 260 SVAATVSALRLISVDSKTYHIFADL 186
SVAA ++A+RLI+VDSK +H+FADL
Sbjct: 418 SVAAAIAAVRLIAVDSKNFHVFADL 442
>ref|NP_181518.1| proline transporter 1; protein id: At2g39890.1, supported by cDNA:
39048. [Arabidopsis thaliana] gi|11358707|pir||T50692
proline transport protein 1 [imported] - Arabidopsis
thaliana gi|1769901|emb|CAA65052.1| proline transporter
1 [Arabidopsis thaliana] gi|2088642|gb|AAB95274.1|
proline transporter 1 [Arabidopsis thaliana]
Length = 442
Score = 224 bits (571), Expect = 7e-58
Identities = 102/145 (70%), Positives = 127/145 (87%)
Frame = -2
Query: 620 VWVKAVPNITAFLQAVIALHIFASPMYEYLDTKFGIKGSAMKVKNLSFRITVRGGYLAFN 441
+WVKA+ N++A LQ+VI+LHIFASP YEY+DTK+GIKG+ +KNL FRI RGGY+A +
Sbjct: 298 LWVKALANVSAILQSVISLHIFASPTYEYMDTKYGIKGNPFAIKNLLFRIMARGGYIAVS 357
Query: 440 TFVSALLPFLGDFMSLTGAISTFPLTFILANHMYLEAKKDKLTNFQKLWHWINIIFFSLM 261
T +SALLPFLGDFMSLTGA+STFPLTFILANHMY +AK +KL QKLWHW+N++FFSLM
Sbjct: 358 TLISALLPFLGDFMSLTGAVSTFPLTFILANHMYYKAKNNKLNAMQKLWHWLNVVFFSLM 417
Query: 260 SVAATVSALRLISVDSKTYHIFADL 186
SVAA ++A+RLI+VDSK +H+FADL
Sbjct: 418 SVAAAIAAVRLIAVDSKNFHVFADL 442
>gb|AAF76897.1|AF274032_1 proline/glycine betaine transporter [Atriplex hortensis]
Length = 453
Score = 223 bits (568), Expect = 2e-57
Identities = 106/145 (73%), Positives = 126/145 (86%)
Frame = -2
Query: 620 VWVKAVPNITAFLQAVIALHIFASPMYEYLDTKFGIKGSAMKVKNLSFRITVRGGYLAFN 441
VW+KA+ NI+ FLQ VIALHIFASPMYEYLDT+FGI GSA+ KNL R+ +RGGYLA N
Sbjct: 307 VWLKALANISTFLQTVIALHIFASPMYEYLDTRFGITGSALNPKNLGSRVLIRGGYLAVN 366
Query: 440 TFVSALLPFLGDFMSLTGAISTFPLTFILANHMYLEAKKDKLTNFQKLWHWINIIFFSLM 261
TFV+ALLPFLGDFMSLTGAISTFPLTFILANHMY +AK++KL+ K+W WINI+FFS M
Sbjct: 367 TFVAALLPFLGDFMSLTGAISTFPLTFILANHMYFKAKRNKLSMAMKIWLWINIVFFSCM 426
Query: 260 SVAATVSALRLISVDSKTYHIFADL 186
+VA+ ++ALRLI+ DSK YH+FADL
Sbjct: 427 AVASFIAALRLIATDSKQYHVFADL 451
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 514,866,546
Number of Sequences: 1393205
Number of extensions: 10896338
Number of successful extensions: 30841
Number of sequences better than 10.0: 108
Number of HSP's better than 10.0 without gapping: 29597
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30820
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 25017613016
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
