Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC012150A_C01 KMC012150A_c01
(669 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAK92805.1| unknown protein [Arabidopsis thaliana] 52 6e-06
ref|NP_564504.1| expressed protein; protein id: At1g47380.1 [Ara... 52 6e-06
emb|CAD40859.1| OSJNBa0064H22.4 [Oryza sativa (japonica cultivar... 52 9e-06
dbj|BAB32964.1| P0504D03.12 [Oryza sativa (japonica cultivar-gro... 45 7e-04
gb|AAK52556.1|AC079853_9 Unknown protein [Oryza sativa] 44 0.002
>gb|AAK92805.1| unknown protein [Arabidopsis thaliana]
Length = 428
Score = 52.4 bits (124), Expect = 6e-06
Identities = 24/32 (75%), Positives = 28/32 (87%), Gaps = 1/32 (3%)
Frame = -3
Query: 667 WDGPFLCSSCQEKKEAMEGKRQS-DRLSSGSE 575
WDGPFLC+SCQ+KK+AMEGKR S DR SS S+
Sbjct: 397 WDGPFLCASCQDKKDAMEGKRSSGDRHSSESD 428
>ref|NP_564504.1| expressed protein; protein id: At1g47380.1 [Arabidopsis thaliana]
gi|25405204|pir||E96514 hypothetical protein T3F24.2
[imported] - Arabidopsis thaliana
gi|9993354|gb|AAG11427.1|AC015449_9 Unknown protein
[Arabidopsis thaliana] gi|23297634|gb|AAN12997.1|
unknown protein [Arabidopsis thaliana]
Length = 428
Score = 52.4 bits (124), Expect = 6e-06
Identities = 24/32 (75%), Positives = 28/32 (87%), Gaps = 1/32 (3%)
Frame = -3
Query: 667 WDGPFLCSSCQEKKEAMEGKRQS-DRLSSGSE 575
WDGPFLC+SCQ+KK+AMEGKR S DR SS S+
Sbjct: 397 WDGPFLCASCQDKKDAMEGKRSSGDRHSSESD 428
>emb|CAD40859.1| OSJNBa0064H22.4 [Oryza sativa (japonica cultivar-group)]
Length = 457
Score = 51.6 bits (122), Expect = 9e-06
Identities = 23/28 (82%), Positives = 23/28 (82%)
Frame = -3
Query: 667 WDGPFLCSSCQEKKEAMEGKRQSDRLSS 584
WDGPFLC SCQEKKEAMEGKR S SS
Sbjct: 423 WDGPFLCHSCQEKKEAMEGKRHSRDSSS 450
>dbj|BAB32964.1| P0504D03.12 [Oryza sativa (japonica cultivar-group)]
gi|14495207|dbj|BAB60926.1| OSJNBa0054L14.21 [Oryza
sativa (japonica cultivar-group)]
Length = 475
Score = 45.4 bits (106), Expect = 7e-04
Identities = 17/23 (73%), Positives = 21/23 (90%)
Frame = -3
Query: 667 WDGPFLCSSCQEKKEAMEGKRQS 599
W+GPFLCS C++KK+AMEGKR S
Sbjct: 448 WEGPFLCSDCRDKKDAMEGKRPS 470
>gb|AAK52556.1|AC079853_9 Unknown protein [Oryza sativa]
Length = 439
Score = 43.9 bits (102), Expect = 0.002
Identities = 18/21 (85%), Positives = 19/21 (89%)
Frame = -3
Query: 667 WDGPFLCSSCQEKKEAMEGKR 605
W GPFLCSSCQ KKEAMEGK+
Sbjct: 410 WGGPFLCSSCQLKKEAMEGKQ 430
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 575,464,482
Number of Sequences: 1393205
Number of extensions: 12428783
Number of successful extensions: 26850
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 26025
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26842
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 29138478756
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
