Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC012143A_C01 KMC012143A_c01
(559 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_175098.1| unknown protein; protein id: At1g44770.1 [Arabi... 72 2e-16
pir||F96506 hypothetical protein T12C22.4 [imported] - Arabidops... 72 2e-16
gb|EAA11587.1| agCP5684 [Anopheles gambiae str. PEST] 39 0.056
ref|NP_773267.1| bll6627 [Bradyrhizobium japonicum] gi|27354907|... 38 0.096
sp|P13462|VID2_AGRRH T-DNA border endonuclease virD2 gi|95077|pi... 37 0.21
>ref|NP_175098.1| unknown protein; protein id: At1g44770.1 [Arabidopsis thaliana]
gi|27808560|gb|AAO24560.1| At1g44770 [Arabidopsis
thaliana]
Length = 271
Score = 71.6 bits (174), Expect(2) = 2e-16
Identities = 36/73 (49%), Positives = 45/73 (61%), Gaps = 3/73 (4%)
Frame = +3
Query: 177 VAWSAVECGHHLRHHNSPAGADQNC---PSDQDSELLRSENRRLRNLLDQNLKLLHNLSE 347
VAW+AVE HH HH N P D++ E LR ENRRLR LL+ NLKL L+E
Sbjct: 19 VAWTAVETYHHHHHHQDENHESTNPISDPRDRELEALRQENRRLRTLLESNLKLFETLAE 78
Query: 348 SPSFLNNCPPDVY 386
S +F ++CP D+Y
Sbjct: 79 SAAFSHDCPSDLY 91
Score = 35.4 bits (80), Expect(2) = 2e-16
Identities = 15/18 (83%), Positives = 17/18 (94%)
Frame = +2
Query: 122 MTGHHALEMTKTVLEVAD 175
MT HHA+E+TKTVLEVAD
Sbjct: 1 MTSHHAIEVTKTVLEVAD 18
>pir||F96506 hypothetical protein T12C22.4 [imported] - Arabidopsis thaliana
gi|8655987|gb|AAF78260.1|AC020576_4 Contains weak
similarity to tail completion gi|5354213 from coliphage
T4 gb|AF158101. ESTs gb|AA650799, gb|AA041054,
gb|R29873, gb|AA712908 come from this gene. [Arabidopsis
thaliana]
Length = 269
Score = 71.6 bits (174), Expect(2) = 2e-16
Identities = 36/73 (49%), Positives = 45/73 (61%), Gaps = 3/73 (4%)
Frame = +3
Query: 177 VAWSAVECGHHLRHHNSPAGADQNC---PSDQDSELLRSENRRLRNLLDQNLKLLHNLSE 347
VAW+AVE HH HH N P D++ E LR ENRRLR LL+ NLKL L+E
Sbjct: 19 VAWTAVETYHHHHHHQDENHESTNPISDPRDRELEALRQENRRLRTLLESNLKLFETLAE 78
Query: 348 SPSFLNNCPPDVY 386
S +F ++CP D+Y
Sbjct: 79 SAAFSHDCPSDLY 91
Score = 35.4 bits (80), Expect(2) = 2e-16
Identities = 15/18 (83%), Positives = 17/18 (94%)
Frame = +2
Query: 122 MTGHHALEMTKTVLEVAD 175
MT HHA+E+TKTVLEVAD
Sbjct: 1 MTSHHAIEVTKTVLEVAD 18
>gb|EAA11587.1| agCP5684 [Anopheles gambiae str. PEST]
Length = 457
Score = 38.5 bits (88), Expect = 0.056
Identities = 25/67 (37%), Positives = 41/67 (60%), Gaps = 3/67 (4%)
Frame = +1
Query: 178 SRGPP--SNAAITSATTI-LPPAPTKTAPPTKTQSCSDPRIDASEICLTRI*SCSTTYLN 348
SRGPP + +T TTI + P TA T T + ++ I AS + +TR + ++TY++
Sbjct: 107 SRGPPLTTERTVTPTTTIVISKTPFVTATRTVTPTSTNI-ITASSVSITRTITPTSTYIS 165
Query: 349 HLPSSTI 369
++PS+TI
Sbjct: 166 YMPSTTI 172
>ref|NP_773267.1| bll6627 [Bradyrhizobium japonicum] gi|27354907|dbj|BAC51892.1|
bll6627 [Bradyrhizobium japonicum USDA 110]
Length = 296
Score = 37.7 bits (86), Expect = 0.096
Identities = 17/40 (42%), Positives = 23/40 (57%)
Frame = +1
Query: 187 PPSNAAITSATTILPPAPTKTAPPTKTQSCSDPRIDASEI 306
PP AA TS +LPPAP AP + S + PR++ S +
Sbjct: 103 PPVLAATTSQPVVLPPAPRSEAPRIEALSSNPPRVELSRV 142
>sp|P13462|VID2_AGRRH T-DNA border endonuclease virD2 gi|95077|pir||S06884 virD2 protein
- Agrobacterium rhizogenes plasmid pRiA4b
gi|39000|emb|CAA31351.1| virD2 (AA 1-436) [Rhizobium
rhizogenes]
Length = 436
Score = 36.6 bits (83), Expect = 0.21
Identities = 21/67 (31%), Positives = 31/67 (45%), Gaps = 6/67 (8%)
Frame = +1
Query: 103 RSQFYNHDWPPRPRDDQDGA*GRRRSR------GPPSNAAITSATTILPPAPTKTAPPTK 264
R+ Y+ W RPRDD +G G +R R GP +NA + P +T+ P+
Sbjct: 318 RTTDYSQRWSKRPRDDDEGPSGAKRVRLEGMAVGPEANAGERDSRGDPVAPPAETSRPSS 377
Query: 265 TQSCSDP 285
Q + P
Sbjct: 378 LQDMARP 384
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 501,550,086
Number of Sequences: 1393205
Number of extensions: 12284827
Number of successful extensions: 57553
Number of sequences better than 10.0: 112
Number of HSP's better than 10.0 without gapping: 47460
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 56028
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19808345223
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
