KMC012129A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KMC012129A_C01 KMC012129A_c01
aaggaacattaactgaaatccaaacatACCATGAACATATCAATTATATGTACTTCATTA
ATGATTTCAAATATTTAAAAAAATACTAATTTAAAAGAAAAAAAATCAAAGCCCTAACTA
ACCCCGACTGGAAAATTTCAATGATAATGTGATTTACAACTAACTGAGCGTGAGCAGAGC
TAATTAAGACTCTGATTAAGCTCTTACAAACACATCCAATTCTCTCAATAATTGCATAAC
TGAGAGTTGTGTGCTCTCAAGCAACAATTTCATCCACGTTAGAATTAAATACAAAACTTG
GGAAAGAAGTTGTGATGTCCCTTAAGTAGGGAAGAGTCATGATTTTCAGCAGTGATGGAT
TTTCAGAAACAAACTTTCGCCACTCGTCAATGTCAATTTTGCCATCTTGGTTCTGGTCAG
CGTCCACGAATGTCTTGTCAATAATTGTTTCTACCACCTCATCTGCCAACTTCATTTCTG
ACTCACAAAGAAGTGCAATTAACATTTGCTTGACCTCTTGGCGTTCAATAAAGCCAGTAC
TGTCCAAATCATAGAGCCTAAATGAAAAATCTATCTTGTCTTCTAGCGCTGCATTTGGGT
GGAAGACATTGAGAGATCTAACAAAGTCATCAAAATCAATAACTCCCTTCTTCTTGACAT
CAAATAGATCAAAGATCCGATTTGCGAAGATATTTTCTTTTTTCCTATTCTTGAAGATTG
CCAACTGAAATTCTTCCTTGCTTATTAATCCATCATCAACCACAGAGCTGCTTATGCTCT
TAAAAAGCTCGAATAATGCTTCGACCTCACTGACAGTGAAAGCTGTCTGTGATGCAAGAA
TTACTGGATCCTCTTGCCCTGGAAACTGCTTTCTTGCCTTACGCAGCTTGAAACAGCCCA
TTTATGGAGGAAATGCAAGGGTAGCACGGTCCAGGACCTGTGCTCGAGTTTCCCCAGATG
AAAGGTGTGGGTTTCTAGAAAGTTGCCATTGGAGTGAGTAgagggcgatggaaagcaagc
gaggaagaagaagtagaaggaggatgaagagagagagagacgcggagttatgagagagaa


Nr search

BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KMC012129A_C01 KMC012129A_c01
         (1080 letters)

Database: nr 
           1,393,205 sequences; 448,689,247 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_567533.1| calcineurin B-like protein 1; protein id: At4g1...   347  2e-94
ref|NP_199521.1| calcineurin B 1; protein id: At5g47100.1, suppo...   338  7e-92
gb|AAL31695.1|AC092390_16 putative calcineurin B-like protein [O...   278  1e-73
ref|NP_194387.1| calcineurin B-like protein 3; protein id: At4g2...   273  4e-72
gb|AAM91028.1| calcineurin B [Pisum sativum]                          273  4e-72

>ref|NP_567533.1| calcineurin B-like protein 1; protein id: At4g17615.1, supported by
           cDNA: gi_3309081 [Arabidopsis thaliana]
           gi|11357210|pir||T51356 calcineurin B-like protein 1
           [imported] - Arabidopsis thaliana
           gi|3309082|gb|AAC26008.1| calcineurin B-like protein 1
           [Arabidopsis thaliana] gi|26452611|dbj|BAC43389.1|
           putative calcineurin B-like protein 1 [Arabidopsis
           thaliana] gi|28973325|gb|AAO63987.1| putative
           calcineurin B-like protein 1 [Arabidopsis thaliana]
          Length = 213

 Score =  347 bits (889), Expect = 2e-94
 Identities = 175/212 (82%), Positives = 194/212 (90%)
 Frame = -3

Query: 901 MGCFKLRKARKQFPGQEDPVILASQTAFTVSEVEALFELFKSISSSVVDDGLISKEEFQL 722
           MGCF   KA K+F G EDPV LAS+TAF+VSEVEALFELFKSISSSVVDDGLI+KEEFQL
Sbjct: 1   MGCFH-SKAAKEFRGHEDPVKLASETAFSVSEVEALFELFKSISSSVVDDGLINKEEFQL 59

Query: 721 AIFKNRKKENIFANRIFDLFDVKKKGVIDFDDFVRSLNVFHPNAALEDKIDFSFRLYDLD 542
           A+FK+RK+ENIFANRIFD+FDVK+KGVIDF DFVRSLNVFHPNA+LEDKIDF+FRLYD+D
Sbjct: 60  ALFKSRKRENIFANRIFDMFDVKRKGVIDFGDFVRSLNVFHPNASLEDKIDFTFRLYDMD 119

Query: 541 STGFIERQEVKQMLIALLCESEMKLADEVVETIIDKTFVDADQNQDGKIDIDEWRKFVSE 362
            TG+IERQEVKQMLIALLCESEMKLADE +E I+DKTF DAD NQDGKID  EW  FV++
Sbjct: 120 CTGYIERQEVKQMLIALLCESEMKLADETIEIILDKTFEDADVNQDGKIDKLEWSDFVNK 179

Query: 361 NPSLLKIMTLPYLRDITTSFPSFVFNSNVDEI 266
           NPSLLKIMTLPYLRDITT+FPSFVF+S VDEI
Sbjct: 180 NPSLLKIMTLPYLRDITTTFPSFVFHSEVDEI 211

>ref|NP_199521.1| calcineurin B 1; protein id: At5g47100.1, supported by cDNA:
           gi_15866278, supported by cDNA: gi_16151824 [Arabidopsis
           thaliana] gi|8978077|dbj|BAA98105.1| calcium sensor
           protein, calcineurin-like [Arabidopsis thaliana]
           gi|15866279|gb|AAL10301.1|AF411958_1 calcineurin B-like
           protein 9 [Arabidopsis thaliana]
           gi|16151825|dbj|BAB69895.1| calcium-binding protein
           AtCBL9 [Arabidopsis thaliana] gi|27754720|gb|AAO22803.1|
           putative calcineurin B 1 protein [Arabidopsis thaliana]
           gi|28394089|gb|AAO42452.1| putative calcineurin B 1
           protein [Arabidopsis thaliana]
          Length = 213

 Score =  338 bits (868), Expect = 7e-92
 Identities = 170/212 (80%), Positives = 191/212 (89%)
 Frame = -3

Query: 901 MGCFKLRKARKQFPGQEDPVILASQTAFTVSEVEALFELFKSISSSVVDDGLISKEEFQL 722
           MGCF    AR +FP  E+PV LAS+TAF+VSEVEAL+ELFKSISSSVVDDGLI+KEEFQL
Sbjct: 1   MGCFHSTAAR-EFPDHENPVKLASETAFSVSEVEALYELFKSISSSVVDDGLINKEEFQL 59

Query: 721 AIFKNRKKENIFANRIFDLFDVKKKGVIDFDDFVRSLNVFHPNAALEDKIDFSFRLYDLD 542
           A+FKNRKKEN+FANRIFDLFDVK+KGVIDF DFVRSLNVFHPNA+LE+K DF+FRLYD+D
Sbjct: 60  ALFKNRKKENLFANRIFDLFDVKRKGVIDFGDFVRSLNVFHPNASLEEKTDFTFRLYDMD 119

Query: 541 STGFIERQEVKQMLIALLCESEMKLADEVVETIIDKTFVDADQNQDGKIDIDEWRKFVSE 362
            TGFIERQEVKQMLIALLCESEMKLAD+ +E I+D+TF DAD ++DGKID  EW  FV +
Sbjct: 120 CTGFIERQEVKQMLIALLCESEMKLADDTIEMILDQTFEDADVDRDGKIDKTEWSNFVIK 179

Query: 361 NPSLLKIMTLPYLRDITTSFPSFVFNSNVDEI 266
           NPSLLKIMTLPYLRDITT+FPSFVFNS VDEI
Sbjct: 180 NPSLLKIMTLPYLRDITTTFPSFVFNSEVDEI 211

>gb|AAL31695.1|AC092390_16 putative calcineurin B-like protein [Oryza sativa]
          Length = 225

 Score =  278 bits (710), Expect = 1e-73
 Identities = 135/201 (67%), Positives = 167/201 (82%)
 Frame = -3

Query: 871 KQFPGQEDPVILASQTAFTVSEVEALFELFKSISSSVVDDGLISKEEFQLAIFKNRKKEN 692
           KQ  G EDP ILA +T F+VSEVEAL+ELFK ISS+V+DDGLI+KEEFQLA+FK  KKE+
Sbjct: 24  KQPKGLEDPEILARETVFSVSEVEALYELFKKISSAVIDDGLINKEEFQLALFKTNKKES 83

Query: 691 IFANRIFDLFDVKKKGVIDFDDFVRSLNVFHPNAALEDKIDFSFRLYDLDSTGFIERQEV 512
           +FA+R+FDLFD K  G++ F++F R+L+VFHPNA L++KIDFSF+LYDL   GFIERQEV
Sbjct: 84  LFADRVFDLFDTKHNGILGFEEFARALSVFHPNAPLDEKIDFSFQLYDLKQQGFIERQEV 143

Query: 511 KQMLIALLCESEMKLADEVVETIIDKTFVDADQNQDGKIDIDEWRKFVSENPSLLKIMTL 332
           KQM++A L ES M L+DEV+E+IIDKTF +AD   DGKID +EWR  V  +PSLLK MTL
Sbjct: 144 KQMVVATLAESGMNLSDEVIESIIDKTFEEADTKHDGKIDKEEWRNLVLRHPSLLKNMTL 203

Query: 331 PYLRDITTSFPSFVFNSNVDE 269
            YL+DITT+FPSFVF+S VD+
Sbjct: 204 QYLKDITTTFPSFVFHSQVDD 224

>ref|NP_194387.1| calcineurin B-like protein 3; protein id: At4g26570.1, supported by
           cDNA: gi_18253012, supported by cDNA: gi_3309085
           [Arabidopsis thaliana] gi|7487041|pir||T08923
           calcineurin B-like protein 3 T15N24.20 [imported] -
           Arabidopsis thaliana gi|3309086|gb|AAC26010.1|
           calcineurin B-like protein 3 [Arabidopsis thaliana]
           gi|4938495|emb|CAB43853.1| calcineurin B-like protein 3
           [Arabidopsis thaliana] gi|7269509|emb|CAB79512.1|
           calcineurin B-like protein 3 [Arabidopsis thaliana]
           gi|18253013|gb|AAL62433.1| calcineurin B-like protein 3
           [Arabidopsis thaliana] gi|22136404|gb|AAM91280.1|
           calcineurin B-like protein 3 [Arabidopsis thaliana]
          Length = 226

 Score =  273 bits (697), Expect = 4e-72
 Identities = 130/201 (64%), Positives = 166/201 (81%)
 Frame = -3

Query: 871 KQFPGQEDPVILASQTAFTVSEVEALFELFKSISSSVVDDGLISKEEFQLAIFKNRKKEN 692
           KQ  G  DP +LA +T F+VSE+EAL+ELFK ISS+V+DDGLI+KEEFQLA+FK  KKE+
Sbjct: 25  KQSGGLGDPELLARETVFSVSEIEALYELFKKISSAVIDDGLINKEEFQLALFKTNKKES 84

Query: 691 IFANRIFDLFDVKKKGVIDFDDFVRSLNVFHPNAALEDKIDFSFRLYDLDSTGFIERQEV 512
           +FA+R+FDLFD K  G++ F++F R+L+VFHPNA +EDKIDFSF+LYDL   GFIERQEV
Sbjct: 85  LFADRVFDLFDTKHNGILGFEEFARALSVFHPNAPIEDKIDFSFQLYDLKQQGFIERQEV 144

Query: 511 KQMLIALLCESEMKLADEVVETIIDKTFVDADQNQDGKIDIDEWRKFVSENPSLLKIMTL 332
           KQM++A L ES M L+DE++E+IIDKTF +AD   DG+ID +EWR  V  +PSLLK MTL
Sbjct: 145 KQMVVATLAESGMNLSDEIIESIIDKTFEEADTKHDGRIDKEEWRTLVLRHPSLLKNMTL 204

Query: 331 PYLRDITTSFPSFVFNSNVDE 269
            YL+DITT+FPSFVF+S V++
Sbjct: 205 QYLKDITTTFPSFVFHSQVED 225

>gb|AAM91028.1| calcineurin B [Pisum sativum]
          Length = 225

 Score =  273 bits (697), Expect = 4e-72
 Identities = 129/197 (65%), Positives = 165/197 (83%)
 Frame = -3

Query: 859 GQEDPVILASQTAFTVSEVEALFELFKSISSSVVDDGLISKEEFQLAIFKNRKKENIFAN 680
           G EDP +LA +T F+VSE+EAL+ELFK ISS+V+DDGLI+KEEFQLA+FK  KKE++FA+
Sbjct: 28  GLEDPELLARETVFSVSEIEALYELFKKISSAVIDDGLINKEEFQLALFKTNKKESLFAD 87

Query: 679 RIFDLFDVKKKGVIDFDDFVRSLNVFHPNAALEDKIDFSFRLYDLDSTGFIERQEVKQML 500
           R+FDLFD K  G++ F++F R+L+VFHPNA ++DKI+FSF+LYDL   GFIERQEVKQM+
Sbjct: 88  RVFDLFDTKHNGILGFEEFARALSVFHPNAPIDDKIEFSFQLYDLKQQGFIERQEVKQMV 147

Query: 499 IALLCESEMKLADEVVETIIDKTFVDADQNQDGKIDIDEWRKFVSENPSLLKIMTLPYLR 320
           +A L ES M L+D+V+E+IIDKTF +AD   DGKID +EWR  V  +PSLLK MTL YL+
Sbjct: 148 VATLAESGMNLSDDVIESIIDKTFEEADTKHDGKIDKEEWRNLVLRHPSLLKNMTLQYLK 207

Query: 319 DITTSFPSFVFNSNVDE 269
           DITT+FPSFVF+S VD+
Sbjct: 208 DITTTFPSFVFHSQVDD 224

  Database: nr
    Posted date:  Apr 1, 2003  2:05 AM
  Number of letters in database: 448,689,247
  Number of sequences in database:  1,393,205
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 851,603,810
Number of Sequences: 1393205
Number of extensions: 17972896
Number of successful extensions: 52870
Number of sequences better than 10.0: 1095
Number of HSP's better than 10.0 without gapping: 48812
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 51889
length of database: 448,689,247
effective HSP length: 124
effective length of database: 275,931,827
effective search space used: 64843979345
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)


EST assemble image


clone accession position
1 SPD100a12_f BP051952 1 450
2 MF054h02_f BP031162 28 485
3 SPD015f07_f BP045202 28 470
4 SPD089a12_f BP051083 28 571
5 MFB097g08_f BP041090 28 466
6 MPD060f02_f AV774029 34 475
7 MF054e01_f BP031145 35 486
8 SPD084c06_f BP050696 44 524
9 MPD087d03_f AV775712 419 990
10 MFB096a02_f BP040965 554 1087




Lotus japonicus
Kazusa DNA Research Institute