Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC012117A_C01 KMC012117A_c01
(524 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||S60608 chlorophyll a/b-binding protein type II precursor, p... 283 7e-76
sp|P10708|CB12_LYCES Chlorophyll A-B binding protein 7, chloropl... 272 2e-72
sp|P13869|CB12_PETHY Chlorophyll A-B binding protein, chloroplas... 265 2e-70
ref|NP_191706.1| light-harvesting chlorophyll a/b binding protei... 222 2e-57
pir||T50550 PS I antenna protein Lhca2 [imported] - Arabidopsis ... 222 2e-57
>pir||S60608 chlorophyll a/b-binding protein type II precursor, photosystem I -
garden pea gi|602359|emb|CAA57492.1| Type II chlorophyll
a/b binding protein from photosystem I [Pisum sativum]
Length = 269
Score = 283 bits (725), Expect = 7e-76
Identities = 140/157 (89%), Positives = 145/157 (92%), Gaps = 1/157 (0%)
Frame = +1
Query: 55 MASACASSAIATLAISTPSSQKNGSPLGTTKAFLSGRKLKVNTFTA-PVGARSTTTVCAA 231
MASACASSAIA +AISTPSSQKNGSP GT+KAFL GRKLKVN+ TA P RST+TVC
Sbjct: 1 MASACASSAIAAVAISTPSSQKNGSPSGTSKAFL-GRKLKVNSSTASPSRVRSTSTVCTV 59
Query: 232 AEPDRPLWFPGSTPPPWLDGSLPGDFGFDPLGLSSDPESLRWNVQAELVHCRWAMLGAAG 411
AEPDRPLWFPGSTPPPWLDGSLPGDFGFDPLGL SDPESLRWNVQAELVH RWAMLGAAG
Sbjct: 60 AEPDRPLWFPGSTPPPWLDGSLPGDFGFDPLGLGSDPESLRWNVQAELVHSRWAMLGAAG 119
Query: 412 IFIPEFLTKIGILNTPSWYTAGEQEYFTDTTTLFIVE 522
IFIPEFLTK+GILNTPSWYTAGEQEYFTDTTTLFIVE
Sbjct: 120 IFIPEFLTKLGILNTPSWYTAGEQEYFTDTTTLFIVE 156
>sp|P10708|CB12_LYCES Chlorophyll A-B binding protein 7, chloroplast precursor (LHCI type
II CAB-7) gi|100201|pir||S07408 chlorophyll a/b-binding
protein type II (cab-7) - tomato
gi|19180|emb|CAA32197.1| chlorophyll a/b-binding protein
[Lycopersicon esculentum] gi|170431|gb|AAA34159.1|
chlorophyll a/b-binding protein gi|226546|prf||1601518A
chlorophyll a/b binding protein II
Length = 270
Score = 272 bits (696), Expect = 2e-72
Identities = 130/157 (82%), Positives = 142/157 (89%), Gaps = 1/157 (0%)
Frame = +1
Query: 55 MASACASSAIATLAISTPSSQKNGSPLGTTKA-FLSGRKLKVNTFTAPVGARSTTTVCAA 231
MASACASS IA +A S+PSS++NGS +GTTKA FL GR+L+V+ ++ ARS TTVC A
Sbjct: 1 MASACASSTIAAVAFSSPSSRRNGSIVGTTKASFLGGRRLRVSKYSTTPTARSATTVCVA 60
Query: 232 AEPDRPLWFPGSTPPPWLDGSLPGDFGFDPLGLSSDPESLRWNVQAELVHCRWAMLGAAG 411
A+PDRPLWFPGSTPPPWLDGSLPGDFGFDPLGL+SDPESLRWN QAELVHCRWAMLGAAG
Sbjct: 61 ADPDRPLWFPGSTPPPWLDGSLPGDFGFDPLGLASDPESLRWNQQAELVHCRWAMLGAAG 120
Query: 412 IFIPEFLTKIGILNTPSWYTAGEQEYFTDTTTLFIVE 522
IFIPE LTKIGILNTPSWYTAGEQEYFTDTTTLFIVE
Sbjct: 121 IFIPELLTKIGILNTPSWYTAGEQEYFTDTTTLFIVE 157
>sp|P13869|CB12_PETHY Chlorophyll A-B binding protein, chloroplast precursor (LHCI type
II CAB) gi|82243|pir||S00442 chlorophyll a/b-binding
protein precursor - garden petunia
gi|169214|gb|AAA33711.1| chlorophyll binding protein
precursor gi|226259|prf||1503272A chlorophyll binding
protein
Length = 270
Score = 265 bits (677), Expect = 2e-70
Identities = 125/157 (79%), Positives = 138/157 (87%), Gaps = 1/157 (0%)
Frame = +1
Query: 55 MASACASSAIATLAISTPSSQKNGSPLGTTKA-FLSGRKLKVNTFTAPVGARSTTTVCAA 231
MASACASS IA +A S+PSSQKNGS +G TKA FL G++L+V+ F APVG+RS A
Sbjct: 1 MASACASSTIAAVAFSSPSSQKNGSIVGATKASFLGGKRLRVSKFIAPVGSRSVAVSAVA 60
Query: 232 AEPDRPLWFPGSTPPPWLDGSLPGDFGFDPLGLSSDPESLRWNVQAELVHCRWAMLGAAG 411
A+PDRPLWFPGSTPP WLDGSLPGDFGFDPLGL SDPESL+WN QAELVH RWAMLGAAG
Sbjct: 61 ADPDRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPESLKWNAQAELVHSRWAMLGAAG 120
Query: 412 IFIPEFLTKIGILNTPSWYTAGEQEYFTDTTTLFIVE 522
IFIPEFLTKIG+LNTPSWYTAGEQEYFTDTTTLF++E
Sbjct: 121 IFIPEFLTKIGVLNTPSWYTAGEQEYFTDTTTLFVIE 157
>ref|NP_191706.1| light-harvesting chlorophyll a/b binding protein; protein id:
At3g61470.1, supported by cDNA: 123159., supported by
cDNA: gi_15451179, supported by cDNA: gi_17529285,
supported by cDNA: gi_18377463, supported by cDNA:
gi_4741939 [Arabidopsis thaliana]
gi|11277629|pir||T47939 Lhca2 protein - Arabidopsis
thaliana gi|6850838|emb|CAB71077.1| Lhca2 protein
[Arabidopsis thaliana]
Length = 257
Score = 222 bits (566), Expect = 2e-57
Identities = 113/157 (71%), Positives = 126/157 (79%), Gaps = 2/157 (1%)
Frame = +1
Query: 58 ASACASSAIATLAISTPSSQKNGSPLGTTKAFLSGRKLKVNT-FTAPVGARSTTTVCA-A 231
+S CASSAIA AIS+PS FL G+KL++ T P +R +V A A
Sbjct: 3 SSLCASSAIA--AISSPS-------------FLGGKKLRLKKKLTVPAVSRQDASVRAVA 47
Query: 232 AEPDRPLWFPGSTPPPWLDGSLPGDFGFDPLGLSSDPESLRWNVQAELVHCRWAMLGAAG 411
A+PDRP+WFPGSTPP WLDGSLPGDFGFDPLGLSSDP+SL+WNVQAE+VHCRWAMLGAAG
Sbjct: 48 ADPDRPIWFPGSTPPEWLDGSLPGDFGFDPLGLSSDPDSLKWNVQAEIVHCRWAMLGAAG 107
Query: 412 IFIPEFLTKIGILNTPSWYTAGEQEYFTDTTTLFIVE 522
IFIPEFLTKIGILNTPSWYTAGEQEYFTD TTLF+VE
Sbjct: 108 IFIPEFLTKIGILNTPSWYTAGEQEYFTDKTTLFVVE 144
>pir||T50550 PS I antenna protein Lhca2 [imported] - Arabidopsis thaliana
gi|4741940|gb|AAD28767.1|AF134120_1 Lhca2 protein
[Arabidopsis thaliana] gi|15451180|gb|AAK96861.1| Lhca2
protein [Arabidopsis thaliana]
gi|17529286|gb|AAL38870.1| putative Lhca2 protein
[Arabidopsis thaliana] gi|18377464|gb|AAL66898.1| Lhca2
protein [Arabidopsis thaliana]
gi|25083456|gb|AAN72081.1| Lhca2 protein [Arabidopsis
thaliana]
Length = 257
Score = 222 bits (565), Expect = 2e-57
Identities = 113/157 (71%), Positives = 126/157 (79%), Gaps = 2/157 (1%)
Frame = +1
Query: 58 ASACASSAIATLAISTPSSQKNGSPLGTTKAFLSGRKLKVNT-FTAPVGARSTTTVCA-A 231
+S CASSAIA AIS+PS FL G+KL++ T P +R +V A A
Sbjct: 3 SSLCASSAIA--AISSPS-------------FLGGKKLRLKKKLTVPAVSRPDASVRAVA 47
Query: 232 AEPDRPLWFPGSTPPPWLDGSLPGDFGFDPLGLSSDPESLRWNVQAELVHCRWAMLGAAG 411
A+PDRP+WFPGSTPP WLDGSLPGDFGFDPLGLSSDP+SL+WNVQAE+VHCRWAMLGAAG
Sbjct: 48 ADPDRPIWFPGSTPPEWLDGSLPGDFGFDPLGLSSDPDSLKWNVQAEIVHCRWAMLGAAG 107
Query: 412 IFIPEFLTKIGILNTPSWYTAGEQEYFTDTTTLFIVE 522
IFIPEFLTKIGILNTPSWYTAGEQEYFTD TTLF+VE
Sbjct: 108 IFIPEFLTKIGILNTPSWYTAGEQEYFTDKTTLFVVE 144
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 541,166,748
Number of Sequences: 1393205
Number of extensions: 13413013
Number of successful extensions: 49040
Number of sequences better than 10.0: 401
Number of HSP's better than 10.0 without gapping: 45609
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 48881
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17019769648
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
