Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC012104A_C01 KMC012104A_c01
(490 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_195298.1| putative protein; protein id: At4g35730.1 [Arab... 78 5e-14
ref|NP_179090.1| hypothetical protein; protein id: At2g14830.1 [... 39 0.031
ref|NP_194961.2| putative protein; protein id: At4g32350.1, supp... 37 0.091
pir||T05345 hypothetical protein F8B4.50 - Arabidopsis thaliana ... 37 0.091
ref|NP_179561.1| hypothetical protein; protein id: At2g19710.1 [... 37 0.12
>ref|NP_195298.1| putative protein; protein id: At4g35730.1 [Arabidopsis thaliana]
gi|7486651|pir||T04678 hypothetical protein F8D20.240 -
Arabidopsis thaliana gi|3367591|emb|CAA20043.1| putative
protein [Arabidopsis thaliana]
gi|7270524|emb|CAB80289.1| putative protein [Arabidopsis
thaliana]
Length = 430
Score = 78.2 bits (191), Expect = 5e-14
Identities = 48/88 (54%), Positives = 55/88 (61%), Gaps = 11/88 (12%)
Frame = -1
Query: 445 RRHSYHPTS----AHSDIKFDESDC-DEEIEAGEP----YVSLPPQRPPPPAPSSQVKRD 293
RRHSY+P S A S+IKFDESD +EE E EP SLPP R PP AP S R
Sbjct: 339 RRHSYNPRSVPPPATSEIKFDESDYYEEETEPDEPSQGRVSSLPPNRAPPQAPQSGESRQ 398
Query: 292 GSI--RVHPKLPDYDELTARFDALKFKK 215
S +VHPKLPDYD L ARF+A++ K
Sbjct: 399 DSSGHQVHPKLPDYDILAARFEAIRHSK 426
>ref|NP_179090.1| hypothetical protein; protein id: At2g14830.1 [Arabidopsis
thaliana] gi|7486188|pir||T02593 hypothetical protein
At2g14830 [imported] - Arabidopsis thaliana
gi|3252806|gb|AAC24176.1| hypothetical protein
[Arabidopsis thaliana]
Length = 454
Score = 38.9 bits (89), Expect = 0.031
Identities = 20/53 (37%), Positives = 29/53 (53%)
Frame = -1
Query: 355 YVSLPPQRPPPPAPSSQVKRDGSIRVHPKLPDYDELTARFDALKFKKSQS*TH 197
+ LP Q+ S K ++ VHPKLPDYD++ A F AL+ ++ Q H
Sbjct: 402 FTMLPDQKESEEGERSFKK---AMHVHPKLPDYDQIVAHFTALRKQQQQKQKH 451
>ref|NP_194961.2| putative protein; protein id: At4g32350.1, supported by cDNA:
gi_19347943 [Arabidopsis thaliana]
gi|19347944|gb|AAL86307.1| unknown protein [Arabidopsis
thaliana] gi|21689735|gb|AAM67489.1| unknown protein
[Arabidopsis thaliana]
Length = 732
Score = 37.4 bits (85), Expect = 0.091
Identities = 28/76 (36%), Positives = 37/76 (47%), Gaps = 10/76 (13%)
Frame = -1
Query: 421 SAHSDIKFDESDCDEEIEAGEPYVSLPPQRPPPP---------APSSQVKRDGSIR-VHP 272
S + +K ESD + I SLP ++ P A S Q +R + VHP
Sbjct: 655 SRRTHLKKGESDEEMMIHQPARSRSLPAEQLAGPSEPAKTFARAASFQPERSSEAKHVHP 714
Query: 271 KLPDYDELTARFDALK 224
KLP+YD+L ARF LK
Sbjct: 715 KLPNYDDLAARFAELK 730
>pir||T05345 hypothetical protein F8B4.50 - Arabidopsis thaliana
gi|2864609|emb|CAA16956.1| putative protein [Arabidopsis
thaliana] gi|4049337|emb|CAA22562.1| putative protein
[Arabidopsis thaliana] gi|7270139|emb|CAB79952.1|
putative protein [Arabidopsis thaliana]
Length = 730
Score = 37.4 bits (85), Expect = 0.091
Identities = 28/76 (36%), Positives = 37/76 (47%), Gaps = 10/76 (13%)
Frame = -1
Query: 421 SAHSDIKFDESDCDEEIEAGEPYVSLPPQRPPPP---------APSSQVKRDGSIR-VHP 272
S + +K ESD + I SLP ++ P A S Q +R + VHP
Sbjct: 653 SRRTHLKKGESDEEMMIHQPARSRSLPAEQLAGPSEPAKTFARAASFQPERSSEAKHVHP 712
Query: 271 KLPDYDELTARFDALK 224
KLP+YD+L ARF LK
Sbjct: 713 KLPNYDDLAARFAELK 728
>ref|NP_179561.1| hypothetical protein; protein id: At2g19710.1 [Arabidopsis thaliana]
gi|25411927|pir||B84580 hypothetical protein At2g19710
[imported] - Arabidopsis thaliana
gi|3687246|gb|AAC62144.1| hypothetical protein
[Arabidopsis thaliana]
Length = 918
Score = 37.0 bits (84), Expect = 0.12
Identities = 22/77 (28%), Positives = 38/77 (48%)
Frame = -1
Query: 454 KDYRRHSYHPTSAHSDIKFDESDCDEEIEAGEPYVSLPPQRPPPPAPSSQVKRDGSIRVH 275
K +HS T+ +D + + + + +V + P P PS + R+ + VH
Sbjct: 841 KANEKHSLPVTTKKTDKESHDQPSPRTVTSS--HVPQTVKSPDPDTPSRE--RERASHVH 896
Query: 274 PKLPDYDELTARFDALK 224
P LP+YD++ AR AL+
Sbjct: 897 PNLPEYDDIFARLGALR 913
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 400,171,604
Number of Sequences: 1393205
Number of extensions: 8681469
Number of successful extensions: 51192
Number of sequences better than 10.0: 95
Number of HSP's better than 10.0 without gapping: 36499
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 48122
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 14271597018
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
