Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC012087A_C01 KMC012087A_c01
(527 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_564010.1| expressed protein; protein id: At1g16880.1, sup... 131 4e-30
gb|AAM64912.1| unknown [Arabidopsis thaliana] 88 5e-17
ref|NP_196094.1| putative protein; protein id: At5g04740.1, supp... 88 5e-17
ref|NP_201390.1| uridylyl transferases-like; protein id: At5g658... 41 0.010
gb|AAG51584.1|AC011665_5 unknown protein, 3' partial [Arabidopsi... 38 0.064
>ref|NP_564010.1| expressed protein; protein id: At1g16880.1, supported by cDNA:
gi_14423501 [Arabidopsis thaliana]
gi|25344189|pir||B86304 hypothetical protein F6I1.12
[imported] - Arabidopsis thaliana
gi|9802776|gb|AAF99845.1|AC051629_12 Unknown protein
[Arabidopsis thaliana]
gi|14423502|gb|AAK62433.1|AF386988_1 Unknown protein
[Arabidopsis thaliana]
Length = 290
Score = 131 bits (330), Expect = 4e-30
Identities = 71/107 (66%), Positives = 84/107 (78%), Gaps = 4/107 (3%)
Frame = +1
Query: 217 KPCHLIHKGRLSSSGTTFIPRAAPVADVEDGNQ----GETDTIPTPIVIIDQDSDPDATV 384
KP + + RLS T RA+ VE+G Q ++D +PTP+VIIDQDSDPDATV
Sbjct: 43 KPLVNLERLRLS----TLKIRASNATAVENGKQEGSAADSDKVPTPVVIIDQDSDPDATV 98
Query: 385 VEITFGDRLGALLDTMNALKSLGLNVVKANVFLDSSGKHNKFAITKA 525
+E+TFGDRLGALLDTMNALK+LGLNVVKANV+LDSSGKHNKFAIT+A
Sbjct: 99 LEVTFGDRLGALLDTMNALKNLGLNVVKANVYLDSSGKHNKFAITRA 145
>gb|AAM64912.1| unknown [Arabidopsis thaliana]
Length = 301
Score = 88.2 bits (217), Expect = 5e-17
Identities = 39/71 (54%), Positives = 57/71 (79%)
Frame = +1
Query: 310 NQGETDTIPTPIVIIDQDSDPDATVVEITFGDRLGALLDTMNALKSLGLNVVKANVFLDS 489
++ + D +P P+V+IDQD+DP+AT+V+++FG+RLGAL+DTM ALK LGL+V+K V +
Sbjct: 85 SEDDDDVVPMPMVMIDQDADPEATIVQLSFGNRLGALIDTMRALKDLGLDVIKGTVSTEG 144
Query: 490 SGKHNKFAITK 522
S K KF+ITK
Sbjct: 145 SIKQTKFSITK 155
>ref|NP_196094.1| putative protein; protein id: At5g04740.1, supported by cDNA:
34592., supported by cDNA: gi_18252932 [Arabidopsis
thaliana] gi|11281139|pir||T48470 hypothetical protein
T1E3.100 - Arabidopsis thaliana
gi|7413536|emb|CAB86016.1| putative protein [Arabidopsis
thaliana] gi|9758449|dbj|BAB08978.1|
gene_id:MUK11.6~unknown protein [Arabidopsis thaliana]
gi|18252933|gb|AAL62393.1| putative protein [Arabidopsis
thaliana] gi|21389645|gb|AAM48021.1| putative protein
[Arabidopsis thaliana]
Length = 301
Score = 88.2 bits (217), Expect = 5e-17
Identities = 39/71 (54%), Positives = 57/71 (79%)
Frame = +1
Query: 310 NQGETDTIPTPIVIIDQDSDPDATVVEITFGDRLGALLDTMNALKSLGLNVVKANVFLDS 489
++ + D +P P+V+IDQD+DP+AT+V+++FG+RLGAL+DTM ALK LGL+V+K V +
Sbjct: 85 SEDDDDVVPMPMVMIDQDADPEATIVQLSFGNRLGALIDTMRALKDLGLDVIKGTVSTEG 144
Query: 490 SGKHNKFAITK 522
S K KF+ITK
Sbjct: 145 SIKQTKFSITK 155
>ref|NP_201390.1| uridylyl transferases-like; protein id: At5g65890.1, supported by
cDNA: gi_13430687 [Arabidopsis thaliana]
gi|9759573|dbj|BAB11136.1| uridylyl transferases-like
[Arabidopsis thaliana]
gi|13430688|gb|AAK25966.1|AF360256_1 putative uridylyl
transferases [Arabidopsis thaliana]
gi|14532892|gb|AAK64128.1| putative uridylyl
transferases [Arabidopsis thaliana]
gi|22138094|gb|AAM93427.1| ACR1 [Arabidopsis thaliana]
Length = 477
Score = 40.8 bits (94), Expect = 0.010
Identities = 20/65 (30%), Positives = 34/65 (51%)
Frame = +1
Query: 325 DTIPTPIVIIDQDSDPDATVVEITFGDRLGALLDTMNALKSLGLNVVKANVFLDSSGKHN 504
+ I P V +D DSDP+ T++++ ++ G LLD + L L L + K + D +
Sbjct: 19 ERINPPRVCVDNDSDPECTLIKVDSANKYGILLDMVQVLADLDLVISKCYISSDGEWFMD 78
Query: 505 KFAIT 519
F +T
Sbjct: 79 VFHVT 83
>gb|AAG51584.1|AC011665_5 unknown protein, 3' partial [Arabidopsis thaliana]
Length = 104
Score = 38.1 bits (87), Expect = 0.064
Identities = 20/60 (33%), Positives = 30/60 (49%)
Frame = +1
Query: 340 PIVIIDQDSDPDATVVEITFGDRLGALLDTMNALKSLGLNVVKANVFLDSSGKHNKFAIT 519
P V+ID DS ATV+ + + G LL+ + L L L + KA + D + F +T
Sbjct: 21 PRVVIDNDSCKKATVIRVDSANEYGILLEVVQILTDLNLTITKAYISSDGGWFMDVFNVT 80
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 450,825,168
Number of Sequences: 1393205
Number of extensions: 9990963
Number of successful extensions: 24462
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 23490
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24449
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17308240320
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
