Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC012081A_C01 KMC012081A_c01
(655 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_174260.1| lipase/hydrolase, putative; protein id: At1g296... 88 9e-17
gb|AAM64368.1| lipase/hydrolase, putative [Arabidopsis thaliana] 88 9e-17
gb|AAM63021.1| GDSL-motif lipase/hydrolase-like protein [Arabido... 79 4e-14
gb|AAM65973.1| lipase/hydrolase, putative [Arabidopsis thaliana] 79 4e-14
ref|NP_174259.1| lipase/hydrolase, putative; protein id: At1g296... 79 4e-14
>ref|NP_174260.1| lipase/hydrolase, putative; protein id: At1g29670.1, supported by
cDNA: 23556., supported by cDNA: gi_18086454
[Arabidopsis thaliana] gi|25336248|pir||A86420 probable
lipase/hydrolase, 118270-120144 [imported] - Arabidopsis
thaliana gi|12323546|gb|AAG51758.1|AC068667_37
lipase/hydrolase, putative; 118270-120144 [Arabidopsis
thaliana] gi|18086455|gb|AAL57681.1| At1g29670/F15D2_22
[Arabidopsis thaliana]
Length = 363
Score = 88.2 bits (217), Expect = 9e-17
Identities = 52/119 (43%), Positives = 70/119 (58%), Gaps = 6/119 (5%)
Frame = -2
Query: 648 NAAAFIFNDKLKSLVELFNNKLSATSKFIFINTTSIDQE---NTLVSGISVTDAACCSPG 478
N+A IFN+KL+SLV+ NN +KFI+IN I Q+ N G VT+A CC G
Sbjct: 244 NSANQIFNNKLRSLVDQLNNN-HPDAKFIYINAYGIFQDMITNPARFGFRVTNAGCCGIG 302
Query: 477 LLG---ECIPDEIPCYNRSDYVFWDEFHTTEAWNLLTAIKSYDTSSNQAFTYPLDIKHL 310
C+P + PC +R+ YVFWD FH TEA N++ A +SY+ S + YP+DI L
Sbjct: 303 RNAGQITCLPGQRPCRDRNAYVFWDAFHPTEAANVIIARRSYNAQS-ASDAYPMDISRL 360
>gb|AAM64368.1| lipase/hydrolase, putative [Arabidopsis thaliana]
Length = 363
Score = 88.2 bits (217), Expect = 9e-17
Identities = 52/119 (43%), Positives = 70/119 (58%), Gaps = 6/119 (5%)
Frame = -2
Query: 648 NAAAFIFNDKLKSLVELFNNKLSATSKFIFINTTSIDQE---NTLVSGISVTDAACCSPG 478
N+A IFN+KL+SLV+ NN +KFI+IN I Q+ N G VT+A CC G
Sbjct: 244 NSANQIFNNKLRSLVDQLNNN-HPDAKFIYINAYGIFQDMITNPARFGFRVTNAGCCGIG 302
Query: 477 LLG---ECIPDEIPCYNRSDYVFWDEFHTTEAWNLLTAIKSYDTSSNQAFTYPLDIKHL 310
C+P + PC +R+ YVFWD FH TEA N++ A +SY+ S + YP+DI L
Sbjct: 303 RNAGQITCLPGQRPCRDRNAYVFWDAFHPTEAANVIIARRSYNAQS-ASDAYPMDISRL 360
>gb|AAM63021.1| GDSL-motif lipase/hydrolase-like protein [Arabidopsis thaliana]
Length = 362
Score = 79.3 bits (194), Expect = 4e-14
Identities = 48/121 (39%), Positives = 68/121 (55%), Gaps = 8/121 (6%)
Frame = -2
Query: 648 NAAAFIFNDKLKSLVELFNNKLSATSKFIFINTTSIDQE---NTLVSGISVTDAACCSPG 478
N+A IFN KL S+V+ FN + +KF +IN I Q+ N G VT+A CC G
Sbjct: 243 NSANRIFNSKLISIVDAFNQN-TPDAKFTYINAYGIFQDIITNPARYGFRVTNAGCCGVG 301
Query: 477 LLG---ECIPDEIPCYNRSDYVFWDEFHTTEAWNLLTAIKSY--DTSSNQAFTYPLDIKH 313
C+P + PC NR++YVFWD FH EA N++ +S+ + +SN +P DI+
Sbjct: 302 RNNGQITCLPGQAPCLNRNEYVFWDAFHPGEAANIVIGRRSFKREAASN---AHPYDIQQ 358
Query: 312 L 310
L
Sbjct: 359 L 359
>gb|AAM65973.1| lipase/hydrolase, putative [Arabidopsis thaliana]
Length = 364
Score = 79.3 bits (194), Expect = 4e-14
Identities = 48/119 (40%), Positives = 65/119 (54%), Gaps = 6/119 (5%)
Frame = -2
Query: 648 NAAAFIFNDKLKSLVELFNNKLSATSKFIFINTTSIDQE---NTLVSGISVTDAACCSPG 478
N+A IFN++L S+V+ NN S S F +IN Q+ N G + T+ ACC G
Sbjct: 245 NSANRIFNNRLISMVQQLNNAHSDAS-FTYINAYGAFQDIITNPSAYGFTNTNTACCGIG 303
Query: 477 LLG---ECIPDEIPCYNRSDYVFWDEFHTTEAWNLLTAIKSYDTSSNQAFTYPLDIKHL 310
G C+P E PC NR +YVFWD FH + A N A +SY+ + + YP+DI L
Sbjct: 304 RNGGQLTCLPGEPPCLNRDEYVFWDAFHPSAAANTAIAKRSYN-AQRSSDVYPIDISQL 361
>ref|NP_174259.1| lipase/hydrolase, putative; protein id: At1g29660.1, supported by
cDNA: 6680., supported by cDNA: gi_15215767 [Arabidopsis
thaliana] gi|25336246|pir||H86419 probable
lipase/hydrolase, 114382-116051 [imported] - Arabidopsis
thaliana gi|12323544|gb|AAG51756.1|AC068667_35
lipase/hydrolase, putative; 114382-116051 [Arabidopsis
thaliana] gi|15215768|gb|AAK91429.1| At1g29660/F15D2_21
[Arabidopsis thaliana] gi|22137090|gb|AAM91390.1|
At1g29660/F15D2_21 [Arabidopsis thaliana]
Length = 364
Score = 79.3 bits (194), Expect = 4e-14
Identities = 48/119 (40%), Positives = 65/119 (54%), Gaps = 6/119 (5%)
Frame = -2
Query: 648 NAAAFIFNDKLKSLVELFNNKLSATSKFIFINTTSIDQE---NTLVSGISVTDAACCSPG 478
N+A IFN++L S+V+ NN S S F +IN Q+ N G + T+ ACC G
Sbjct: 245 NSANRIFNNRLISMVQQLNNAHSDAS-FTYINAYGAFQDIIANPSAYGFTNTNTACCGIG 303
Query: 477 LLG---ECIPDEIPCYNRSDYVFWDEFHTTEAWNLLTAIKSYDTSSNQAFTYPLDIKHL 310
G C+P E PC NR +YVFWD FH + A N A +SY+ + + YP+DI L
Sbjct: 304 RNGGQLTCLPGEPPCLNRDEYVFWDAFHPSAAANTAIAKRSYN-AQRSSDVYPIDISQL 361
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 511,591,405
Number of Sequences: 1393205
Number of extensions: 10484357
Number of successful extensions: 24111
Number of sequences better than 10.0: 126
Number of HSP's better than 10.0 without gapping: 23492
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24077
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 28144814643
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
