Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC012078A_C01 KMC012078A_c01
(552 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAG49034.1|AF204787_1 ripening regulated protein DDTFR10 [Lyc... 227 6e-59
sp|P93447|EF1B_PIMBR ELONGATION FACTOR 1-BETA (EF-1-BETA) gi|184... 227 8e-59
ref|NP_179402.1| putative elongation factor beta-1; protein id:... 223 1e-57
gb|AAM64977.1| putative elongation factor beta-1 [Arabidopsis t... 221 3e-57
ref|NP_174314.1| elongation factor 1-beta, putative; protein id:... 219 2e-56
>gb|AAG49034.1|AF204787_1 ripening regulated protein DDTFR10 [Lycopersicon esculentum]
Length = 205
Score = 227 bits (579), Expect = 6e-59
Identities = 116/149 (77%), Positives = 136/149 (90%), Gaps = 1/149 (0%)
Frame = +2
Query: 107 MAITLYELSSESGLKKLDEYLLTRSYISGFQASKDDVTVYAALSKAPSEEFVNVSRWYKH 286
MA+ + L+S+SGLKKLDEYLL RSYI+G+QASKDD+TVY+ L+K+PS E+VN SRWYKH
Sbjct: 1 MAVAFHNLNSDSGLKKLDEYLLARSYITGYQASKDDITVYSYLAKSPSAEYVNASRWYKH 60
Query: 287 IDALLRISGVSGEGSGVIVDGSSLVAEDAVATPPAADTKASAA-EDDDDDDVDLFGEETE 463
IDALLRISGVSGEG+GVIV+GS+ + E AVATPP AD+KASAA E+DDDDDVDLFGEETE
Sbjct: 61 IDALLRISGVSGEGAGVIVEGSAPITE-AVATPPVADSKASAAEEEDDDDDVDLFGEETE 119
Query: 464 EEKQAAEARAAAVKASGKKKESGKSSVLL 550
EEK+AAE RAAA+KASGKKKESGKSSVL+
Sbjct: 120 EEKKAAEERAAALKASGKKKESGKSSVLM 148
>sp|P93447|EF1B_PIMBR ELONGATION FACTOR 1-BETA (EF-1-BETA) gi|1841870|gb|AAB68395.1|
elongation factor 1-beta [Pimpinella brachycarpa]
Length = 226
Score = 227 bits (578), Expect = 8e-59
Identities = 116/148 (78%), Positives = 132/148 (88%)
Frame = +2
Query: 107 MAITLYELSSESGLKKLDEYLLTRSYISGFQASKDDVTVYAALSKAPSEEFVNVSRWYKH 286
MA+T Y+LSSE+GL+KLDEYLL+RSYISG+QASKDD+ V+AAL+K PS ++VNVSRWY H
Sbjct: 1 MAVTFYDLSSEAGLEKLDEYLLSRSYISGYQASKDDLAVHAALAKPPSSKYVNVSRWYNH 60
Query: 287 IDALLRISGVSGEGSGVIVDGSSLVAEDAVATPPAADTKASAAEDDDDDDVDLFGEETEE 466
++ALLRISGVS EG GV V+GSS VATPP ADTKASAAEDDDDDDVDLFGEETEE
Sbjct: 61 VEALLRISGVSAEGCGVTVEGSS------VATPPVADTKASAAEDDDDDDVDLFGEETEE 114
Query: 467 EKQAAEARAAAVKASGKKKESGKSSVLL 550
EK+A+E RAAAVKASGKKKESGKSSVLL
Sbjct: 115 EKKASEERAAAVKASGKKKESGKSSVLL 142
>ref|NP_179402.1| putative elongation factor beta-1; protein id: At2g18110.1,
supported by cDNA: 35337., supported by cDNA:
gi_17473803, supported by cDNA: gi_20148478 [Arabidopsis
thaliana] gi|13124232|sp|Q9SI20|EF1C_ARATH Probable
elongation factor 1-beta (EF-1-beta)
gi|25299532|pir||D84560 probable elongation factor
1-beta [imported] - Arabidopsis thaliana
gi|4874292|gb|AAD31355.1| putative elongation factor
beta-1 [Arabidopsis thaliana] gi|17473804|gb|AAL38335.1|
putative elongation factor 1-beta [Arabidopsis thaliana]
gi|20148479|gb|AAM10130.1| putative elongation factor
1-beta [Arabidopsis thaliana] gi|20197598|gb|AAM15146.1|
putative elongation factor beta-1 [Arabidopsis
thaliana]
Length = 231
Score = 223 bits (568), Expect = 1e-57
Identities = 112/141 (79%), Positives = 130/141 (91%)
Frame = +2
Query: 128 LSSESGLKKLDEYLLTRSYISGFQASKDDVTVYAALSKAPSEEFVNVSRWYKHIDALLRI 307
L+S SGLKKLDE+LLTRSYI+G+QASKDD+TV+ ALSK P+ EFVNVSRW+ HIDALLRI
Sbjct: 7 LNSGSGLKKLDEHLLTRSYITGYQASKDDITVFTALSKPPTSEFVNVSRWFNHIDALLRI 66
Query: 308 SGVSGEGSGVIVDGSSLVAEDAVATPPAADTKASAAEDDDDDDVDLFGEETEEEKQAAEA 487
SGVS EGSGVIV+GSS + E+AVATPPAAD+K +AAE++DDDDVDLFGEETEEEK+AAE
Sbjct: 67 SGVSAEGSGVIVEGSSPITEEAVATPPAADSKDTAAEEEDDDDVDLFGEETEEEKKAAEE 126
Query: 488 RAAAVKASGKKKESGKSSVLL 550
RAA+VKAS KKKESGKSSVL+
Sbjct: 127 RAASVKASTKKKESGKSSVLM 147
>gb|AAM64977.1| putative elongation factor beta-1 [Arabidopsis thaliana]
Length = 231
Score = 221 bits (564), Expect = 3e-57
Identities = 110/141 (78%), Positives = 130/141 (92%)
Frame = +2
Query: 128 LSSESGLKKLDEYLLTRSYISGFQASKDDVTVYAALSKAPSEEFVNVSRWYKHIDALLRI 307
L+S SGLKKLDE+LLTRSYI+G+QASKDD+TV+ ALSK P+ E+VNVSRW+ HIDALLRI
Sbjct: 7 LNSGSGLKKLDEHLLTRSYITGYQASKDDITVFTALSKPPTSEYVNVSRWFNHIDALLRI 66
Query: 308 SGVSGEGSGVIVDGSSLVAEDAVATPPAADTKASAAEDDDDDDVDLFGEETEEEKQAAEA 487
SGVS EGSGVIV+GSS + E+A+ATPPAAD+K +AAE++DDDDVDLFGEETEEEK+AAE
Sbjct: 67 SGVSAEGSGVIVEGSSPITEEAIATPPAADSKDTAAEEEDDDDVDLFGEETEEEKKAAEE 126
Query: 488 RAAAVKASGKKKESGKSSVLL 550
RAA+VKAS KKKESGKSSVL+
Sbjct: 127 RAASVKASTKKKESGKSSVLM 147
>ref|NP_174314.1| elongation factor 1-beta, putative; protein id: At1g30230.1
[Arabidopsis thaliana] gi|25299531|pir||E86426 probable
elongation factor 1-beta [imported] - Arabidopsis
thaliana gi|12320854|gb|AAG50564.1|AC073506_6 elongation
factor 1-beta, putative [Arabidopsis thaliana]
Length = 242
Score = 219 bits (558), Expect = 2e-56
Identities = 107/141 (75%), Positives = 131/141 (92%)
Frame = +2
Query: 128 LSSESGLKKLDEYLLTRSYISGFQASKDDVTVYAALSKAPSEEFVNVSRWYKHIDALLRI 307
L+S++GLKKLDE+LLTRSYI+G+QASKDD+TV+AAL+K P+ ++VN SRWY HIDALLRI
Sbjct: 7 LNSDAGLKKLDEHLLTRSYITGYQASKDDITVFAALAKPPTSQYVNASRWYNHIDALLRI 66
Query: 308 SGVSGEGSGVIVDGSSLVAEDAVATPPAADTKASAAEDDDDDDVDLFGEETEEEKQAAEA 487
SGVS EGSGVIV+GS+ + E+AVATPPAAD+K +AA+++DDDDVDLFGEETEEEK+AAE
Sbjct: 67 SGVSAEGSGVIVEGSAPITEEAVATPPAADSKDAAADEEDDDDVDLFGEETEEEKKAAEE 126
Query: 488 RAAAVKASGKKKESGKSSVLL 550
RAA+VKAS KKKESGKSSVL+
Sbjct: 127 RAASVKASTKKKESGKSSVLI 147
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 481,754,635
Number of Sequences: 1393205
Number of extensions: 10668203
Number of successful extensions: 129671
Number of sequences better than 10.0: 1724
Number of HSP's better than 10.0 without gapping: 68336
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104000
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19234190289
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
